ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	101253216	novel plant SNARE 11
sly-r.6	101253216	novel plant SNARE 11
sly-u.5	101248280	novel plant SNARE 13-like
ath-u.5	NPSN11	Putative plant snare 11
ath-u.5	NPSN13	Putative plant snare 13
ath-u.5	NPSN12	Putative plant snare 12
gma-u.5	100778540	SNARE superfamily protein
gma-u.5	100786429	novel plant SNARE 11
gma-u.5	100795077	novel plant SNARE 13
vvi-u.5	100259220	novel plant SNARE 11
vvi-u.5	100251065	novel plant SNARE 13
ppo-u.5	7477198	novel plant SNARE 13
ppo-u.5	18096908	novel plant SNARE 11
mtr-u.5	25486607	novel plant SNARE 13
mtr-u.5	25493574	novel plant SNARE 11
mtr-u.5	11446715	novel plant SNARE 13
osa-u.5	9267986	novel plant SNARE 11
osa-u.5	4332931	novel plant SNARE 13
osa-u.5	4344040	novel plant SNARE 13
zma-u.5	100273395	uncharacterized LOC100273395
zma-u.5	103647882	novel plant SNARE 13
zma-u.5	100193631	uncharacterized LOC100193631

Annotation

functional annotation

KEGG

GO BP

GO:0006890 [list] [network] retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	(34 genes)	IEA
GO:0006906 [list] [network] vesicle fusion	(49 genes)	IEA

GO CC

GO:0031902 [list] [network] late endosome membrane	(9 genes)	IEA
GO:0012507 [list] [network] ER to Golgi transport vesicle membrane	(30 genes)	IEA
GO:0031201 [list] [network] SNARE complex	(46 genes)	IEA
GO:0005789 [list] [network] endoplasmic reticulum membrane	(235 genes)	IEA
GO:0005794 [list] [network] Golgi apparatus	(494 genes)	IEA

GO MF

GO:0005484 [list] [network] SNAP receptor activity	(42 genes)	IEA
GO:0000149 [list] [network] SNARE binding	(70 genes)	IEA

Protein

XP_004245842.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, golg 4, plas 1

(predict for XP_004245842.1)

Subcellular
localization
TargetP

other 7, chlo 3

(predict for XP_004245842.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101253216	sly-r.6 for 101253216	sly-u.5 for 101248280	ath-u.5 for NPSN11	ath-u.5 for NPSN13	ath-u.5 for NPSN12	gma-u.5 for 100778540	gma-u.5 for 100786429	gma-u.5 for 100795077	vvi-u.5 for 100259220	vvi-u.5 for 100251065	ppo-u.5 for 7477198	ppo-u.5 for 18096908	mtr-u.5 for 25486607	mtr-u.5 for 25493574	mtr-u.5 for 11446715	osa-u.5 for 9267986	osa-u.5 for 4332931	osa-u.5 for 4344040	zma-u.5 for 100273395	zma-u.5 for 103647882	zma-u.5 for 100193631

Ortholog

Ortholog ID: 1611

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

NPSN13

NPSN12

Function^*

novel plant SNARE 13-like

novel plant SNARE 11

novel plant SNARE 13-like

novel plant SNARE 11

putative plant SNARE 11

putative plant SNARE 13

Putative plant snare 13

Putative plant snare 12

SNARE superfamily protein

novel plant SNARE 11-like

novel plant SNARE 13

novel plant SNARE 11

novel plant SNARE 13

novel plant SNARE 11

novel plant SNARE 13

novel plant SNARE 11

novel plant SNARE 11-like

novel plant SNARE 13-like

novel plant SNARE 11

novel plant SNARE 13

novel plant SNARE 11

novel plant SNARE 13

uncharacterized LOC100193631

novel plant SNARE 13

novel plant SNARE 13-like

novel plant SNARE 12

novel plant SNARE 11

novel plant SNARE 13

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00510	N-Glycan biosynthesis	2
sot00513	Various types of N-glycan biosynthesis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	2
nta04144	Endocytosis	2
nta05100	Bacterial invasion of epithelial cells	2
nta04120	Ubiquitin mediated proteolysis	2
nta00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04145	Phagosome	2
ath04148	Efferocytosis	2
ath04517	IgSF CAM signaling	2
ath04518	Integrin signaling	2
ath04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04517	IgSF CAM signaling	3
ath04518	Integrin signaling	3
ath04145	Phagosome	2
ath04148	Efferocytosis	2
ath04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04626	Plant-pathogen interaction	2
vvi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3
mtr04141	Protein processing in endoplasmic reticulum	3
mtr03083	Polycomb repressive complex	2
mtr00970	Aminoacyl-tRNA biosynthesis	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	3
bna04145	Phagosome	3
bna04148	Efferocytosis	3
bna03015	mRNA surveillance pathway	2
bna04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	4
osa00600	Sphingolipid metabolism	2
osa04142	Lysosome	2
osa03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04130	SNARE interactions in vesicular transport	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	4
tae04814	Motor proteins	3
tae04820	Cytoskeleton in muscle cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04130	SNARE interactions in vesicular transport	2
sbi00520	Amino sugar and nucleotide sugar metabolism	2
sbi01250	Biosynthesis of nucleotide sugars	2
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00240	Pyrimidine metabolism	2
bdi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	6
cre04130	SNARE interactions in vesicular transport	3
cre03250	Viral life cycle - HIV-1	2
cre03272	Virion - Hepatitis viruses	2

Expression

Expression pattern

Entrez Gene ID^*

101248280

101253216

102592689

102585527

107766284

107830422

821008

841244

100778540

100796579

103839252

103865434

100259220

100251065

18096908

7477198

25486607

25493574

107920698

106366978

111207171

102620719

102615453

9267986

4332931

100193631

103647882

123086093

123097389

123425104

8063535

8069192

100838158

100822511

5717993

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 101253216 (sly-u.5 coexpression data)

Top 50 enrichment test to 101253216 (sly-u.5 coexpression data)


Species	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	3	3	2	2	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101253216 (sly-u.5 coexpression data)

Top 50 enrichment test to 101253216 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**