ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	101253626	uncharacterized LOC101253626
sly-r.6	101253626	uncharacterized LOC101253626
ath-u.5	AT2G42510	survival motor neuron interacting protein
ath-u.5	AT1G54380	spliceosome protein-like protein
gma-u.5	100809164	gem-associated protein 2
gma-u.5	100790542	gem-associated protein 2
vvi-u.5	100260062	uncharacterized LOC100260062
ppo-u.5	18106971	uncharacterized LOC18106971
ppo-u.5	7486030	uncharacterized LOC7486030
mtr-u.5	11446023	gem-associated protein 2
osa-u.5	4350305	uncharacterized LOC4350305
zma-u.5	100285014	uncharacterized LOC100285014

functional annotation

KEGG

GO BP

GO:0000387 [list] [network] spliceosomal snRNP assembly

(24 genes)

IEA

GO CC

GO:0032797 [list] [network] SMN complex	(2 genes)	IEA
GO:0005634 [list] [network] nucleus	(2947 genes)	IEA

GO MF

Protein

XP_004247975.2 [sequence] [blastp]
XP_025888535.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_004247975.2)
nucl 9, cyto 1, cysk 1	(predict for XP_025888535.2)

Subcellular
localization
TargetP

other 7, chlo 4	(predict for XP_004247975.2)
other 7, chlo 4	(predict for XP_025888535.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101253626	sly-r.6 for 101253626	ath-u.5 for AT2G42510	ath-u.5 for AT1G54380	gma-u.5 for 100809164	gma-u.5 for 100790542	vvi-u.5 for 100260062	ppo-u.5 for 18106971	ppo-u.5 for 7486030	mtr-u.5 for 11446023	osa-u.5 for 4350305	zma-u.5 for 100285014

Ortholog ID: 7966

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC101253626

uncharacterized LOC102594970

uncharacterized LOC107788051

uncharacterized LOC107780729

spliceosome protein-like protein

survival motor neuron interacting protein

gem-associated protein 2

uncharacterized LOC103866646

uncharacterized LOC100260062

uncharacterized LOC7486030

uncharacterized LOC18106971

gem-associated protein 2

uncharacterized LOC107903773

uncharacterized LOC107914698

uncharacterized LOC106392403

uncharacterized LOC106394230

uncharacterized LOC102619708

uncharacterized LOC4350305

uncharacterized LOC100285014

uncharacterized LOC123128900

gem-associated protein 2

gem-associated protein 2-like

uncharacterized LOC8066197

gem-associated protein 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03420	Nucleotide excision repair	2
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	4
nta04120	Ubiquitin mediated proteolysis	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	7
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	3
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	7
bra03013	Nucleocytoplasmic transport	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	3
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03440	Homologous recombination	3
osa03030	DNA replication	2
osa03420	Nucleotide excision repair	2
osa03430	Mismatch repair	2
osa03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	7

Expression

Expression pattern

Entrez Gene ID^*

101253626

102594970

107788051

107780729

841879

818851

100790542

100809164

103866646

100260062

7486030

18106971

11446023

107903773

107914698

106392403

106394230

102619708

4350305

100285014

123128900

123146057

123403678

8066197

100838808

66054842

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 101253626 (sly-u.5 coexpression data)

Top 50 enrichment test to 101253626 (sly-u.5 coexpression data)


Species	sly	ath	gma	vvi	ppo	mtr	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	2	2	2	1	2	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101253626 (sly-u.5 coexpression data)

Top 50 enrichment test to 101253626 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**