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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101253638   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 sly-r.6   101253638   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 sly-u.5   101259321   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like 
 sot-r.1   102580823   pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like 
 sot-r.1   102596865   pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 
 nta-r.1   107788760   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like 
 nta-r.1   107784707   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 ath-u.5   EMB3011   RNA helicase family protein 
 gma-u.5   100817761   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 gma-u.5   100804199   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 bra-r.6   103850838   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 vvi-u.5   100261447   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 ppo-u.5   7492959   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 mtr-u.5   25489050   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 mtr-u.5   11423262   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 ghi-r.1   121202928   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 ghi-r.1   107962088   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 bna-r.1   106410625   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 bna-r.1   106383948   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 cit-r.1   102625079   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 osa-u.5   4343339   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 zma-u.5   103647704   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 tae-r.2   123188538   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 tae-r.2   123044718   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 tae-r.2   123052578   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 hvu-r.1   123412136   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like 
 hvu-r.1   123425944   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 hvu-r.1   123444134   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like 
 sbi-r.1   8077485   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 bdi-r.1   100830086   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 
 bdi-r.1   100823008   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like 
 cre-r.1   CHLRE_24g755347v5   uncharacterized protein 

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Top 50 coexpressed genes to 101253638 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101253638 (sly-u.5 coexpression data)

CoexMap"101253638"


slyLOC101253638 | Entrez gene ID : 101253638      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 2 2 1 2 1 1 1 2 2 2 1 1 1 3 3 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03040 [list] [network] Spliceosome (385 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (162 genes)  IEA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (144 genes)  IEA  
GO:0005622 [list] [network] intracellular anatomical structure  (7992 genes)  IEA  
GO MF
GO:0004386 [list] [network] helicase activity  (153 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein XP_004249090.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  cysk 1  (predict for XP_004249090.1)
Subcellular
localization
TargetP
other 9  (predict for XP_004249090.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101253638
sly-r.6
for
101253638
sly-u.5
for
101259321
sot-r.1
for
102580823
sot-r.1
for
102596865
nta-r.1
for
107788760
nta-r.1
for
107784707
ath-u.5
for
EMB3011
gma-u.5
for
100817761
gma-u.5
for
100804199
bra-r.6
for
103850838
vvi-u.5
for
100261447
ppo-u.5
for
7492959
mtr-u.5
for
25489050
mtr-u.5
for
11423262
ghi-r.1
for
121202928
ghi-r.1
for
107962088
bna-r.1
for
106410625
bna-r.1
for
106383948
cit-r.1
for
102625079
osa-u.5
for
4343339
zma-u.5
for
103647704
tae-r.2
for
123188538
tae-r.2
for
123044718
tae-r.2
for
123052578
hvu-r.1
for
123412136
hvu-r.1
for
123425944
hvu-r.1
for
123444134
sbi-r.1
for
8077485
bdi-r.1
for
100830086
bdi-r.1
for
100823008
cre-r.1
for
CHLRE_24g755347v5


Ortholog ID: 7327
Species sly sly sot sot nta nta ath gma gma bra vvi ppo mtr mtr ghi ghi bna bna cit osa zma tae tae tae hvu hvu hvu sbi bdi bdi cre
Symbol LOC101253638 LOC101259321 LOC102580823 LOC102596865 LOC107788760 LOC107784707 EMB3011 LOC100817761 LOC100804199 LOC103850838 LOC100261447 LOC7492959 LOC25489050 LOC11423262 LOC121202928 LOC107962088 LOC106410625 LOC106383948 LOC102625079 LOC4343339 LOC103647704 LOC123188538 LOC123044718 LOC123052578 LOC123412136 LOC123425944 LOC123444134 LOC8077485 LOC100830086 LOC100823008 CHLRE_24g755347v5
Function* pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 RNA helicase family protein pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 3
sly04626 Plant-pathogen interaction 2
sly00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03022 Basal transcription factors 2
nta03082 ATP-dependent chromatin remodeling 2
nta03450 Non-homologous end-joining 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03082 ATP-dependent chromatin remodeling 2
nta03450 Non-homologous end-joining 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03013 Nucleocytoplasmic transport 4
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03013 Nucleocytoplasmic transport 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03040 Spliceosome 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03013 Nucleocytoplasmic transport 3
ppo03250 Viral life cycle - HIV-1 2
ppo03420 Nucleotide excision repair 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 7
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03015 mRNA surveillance pathway 5
tae03018 RNA degradation 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101253638 101259321 102580823 102596865 107788760 107784707 831141 100817761 100804199 103850838 100261447 7492959 25489050 11423262 121202928 107962088 106410625 106383948 102625079 4343339 103647704 123188538 123044718 123052578 123412136 123425944 123444134 8077485 100830086 100823008 5727815
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