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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101254281   glutamate synthase 1 [NADH], chloroplastic 
 sly-r.6   101254281   glutamate synthase 1 [NADH], chloroplastic 
 sly-m.5   101254281   glutamate synthase 1 [NADH], chloroplastic 
 ath-u.5   GLT1   NADH-dependent glutamate synthase 1 
 gma-u.5   100819513   glutamate synthase [NADH], amyloplastic 
 gma-u.5   100815931   glutamate synthase [NADH], amyloplastic 
 gma-u.5   100809905   glutamate synthase [NADH], amyloplastic 
 vvi-u.5   100246868   glutamate synthase [NADH], amyloplastic 
 ppo-u.5   18103637   glutamate synthase [NADH], amyloplastic 
 ppo-u.5   7453835   glutamate synthase [NADH], amyloplastic 
 mtr-u.5   25482265   glutamate synthase [NADH], amyloplastic 
 osa-u.5   4324398   glutamate synthase 1 [NADH], chloroplastic-like 
 osa-u.5   4339561   glutamate synthase 2 [NADH], chloroplastic-like 
 zma-u.5   103636185   glutamate synthase 1 [NADH], chloroplastic 
 zma-u.5   103651348   glutamate synthase 1 [NADH], chloroplastic 

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Top 50 coexpressed genes to 101254281 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101254281 (sly-u.5 coexpression data)

CoexMap"101254281"


slyLOC101254281 | Entrez gene ID : 101254281    
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 1 3 1 2 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00250 [list] [network] Alanine, aspartate and glutamate metabolism (54 genes)
sly00910 [list] [network] Nitrogen metabolism (36 genes)
sly01230 [list] [network] Biosynthesis of amino acids (226 genes)
GO BP
GO:0006537 [list] [network] glutamate biosynthetic process  (3 genes)  IEA  
GO CC
GO MF
GO:0016040 [list] [network] glutamate synthase (NADH) activity  (2 genes)  IEA  
GO:0010181 [list] [network] FMN binding  (32 genes)  IEA  
GO:0051536 [list] [network] iron-sulfur cluster binding  (87 genes)  IEA  
GO:0050660 [list] [network] flavin adenine dinucleotide binding  (141 genes)  IEA  
GO:0005506 [list] [network] iron ion binding  (371 genes)  IEA  
Protein XP_004234955.2 [sequence] [blastp]
XP_010318008.2 [sequence] [blastp]
XP_010318009.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 3  (predict for XP_004234955.2)
chlo 5,  mito 3,  cyto 1,  cyto_mito 1,  mito_plas 1  (predict for XP_010318008.2)
chlo 5,  mito 3,  cyto 1,  cyto_mito 1,  mito_plas 1  (predict for XP_010318009.2)
Subcellular
localization
TargetP
chlo 7  (predict for XP_004234955.2)
other 7  (predict for XP_010318008.2)
other 7  (predict for XP_010318009.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101254281

.
sly-r.6
for
101254281

.
sly-m.5
for
101254281

.
ath-u.5
for
GLT1

.
gma-u.5
for
100819513

.
gma-u.5
for
100815931

.
gma-u.5
for
100809905

.
vvi-u.5
for
100246868

.
ppo-u.5
for
18103637

.
ppo-u.5
for
7453835

.
mtr-u.5
for
25482265

.
osa-u.5
for
4324398

.
osa-u.5
for
4339561

.
zma-u.5
for
103636185

.
zma-u.5
for
103651348

.


Ortholog ID: 6682
Species ath gma gma sly osa osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol GLT1 LOC100784900 LOC100819513 LOC101254281 LOC4324398 LOC4339561 LOC103651348 LOC103857079 LOC100246868 LOC18103637 LOC7453835 LOC25482265 LOC123078967 LOC123070558 LOC123444122 LOC107929529 LOC107947250 LOC111213076 LOC106387482 CHLRE_13g592200v5 LOC8074568 LOC8068026 LOC102580516 LOC102620225 LOC100844360 LOC100832857 LOC107822887 LOC107809098
Function* NADH-dependent glutamate synthase 1 glutamate synthase [NADH], amyloplastic glutamate synthase [NADH], amyloplastic glutamate synthase 1 [NADH], chloroplastic glutamate synthase 1 [NADH], chloroplastic-like glutamate synthase 2 [NADH], chloroplastic-like glutamate synthase 1 [NADH], chloroplastic glutamate synthase 1 [NADH], chloroplastic glutamate synthase [NADH], amyloplastic glutamate synthase [NADH], amyloplastic glutamate synthase [NADH], amyloplastic glutamate synthase [NADH], amyloplastic glutamate synthase 1 [NADH], chloroplastic glutamate synthase 1 [NADH], chloroplastic glutamate synthase 1 [NADH], chloroplastic glutamate synthase [NADH], amyloplastic glutamate synthase [NADH], amyloplastic glutamate synthase 1 [NADH], chloroplastic glutamate synthase 1 [NADH], chloroplastic uncharacterized protein glutamate synthase 2 [NADH], chloroplastic glutamate synthase 1 [NADH], chloroplastic glutamate synthase 1 [NADH], chloroplastic glutamate synthase [NADH], amyloplastic glutamate synthase 2 [NADH], chloroplastic glutamate synthase 1 [NADH], chloroplastic glutamate synthase 1 [NADH], chloroplastic glutamate synthase 1 [NADH], chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 6
ath00910 Nitrogen metabolism 5
ath00030 Pentose phosphate pathway 4
ath00010 Glycolysis / Gluconeogenesis 3
ath01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 6
sly01200 Carbon metabolism 5
sly00010 Glycolysis / Gluconeogenesis 4
sly00710 Carbon fixation by Calvin cycle 3
sly00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 6
osa01200 Carbon metabolism 6
osa00260 Glycine, serine and threonine metabolism 3
osa00270 Cysteine and methionine metabolism 3
osa00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00920 Sulfur metabolism 3
zma00061 Fatty acid biosynthesis 3
zma00620 Pyruvate metabolism 3
zma01212 Fatty acid metabolism 3
zma00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00250 Alanine, aspartate and glutamate metabolism 2
ppo00910 Nitrogen metabolism 2
ppo01230 Biosynthesis of amino acids 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 8
ppo00670 One carbon pool by folate 4
ppo00270 Cysteine and methionine metabolism 4
ppo00620 Pyruvate metabolism 3
ppo00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 4
mtr01200 Carbon metabolism 4
mtr00195 Photosynthesis 3
mtr00250 Alanine, aspartate and glutamate metabolism 3
mtr00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 13
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00910 Nitrogen metabolism 3
tae00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 13
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00910 Nitrogen metabolism 3
tae00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 6
hvu01230 Biosynthesis of amino acids 6
hvu00010 Glycolysis / Gluconeogenesis 4
hvu00620 Pyruvate metabolism 3
hvu01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00910 Nitrogen metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00910 Nitrogen metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 8
bna01230 Biosynthesis of amino acids 8
bna00220 Arginine biosynthesis 6
bna00710 Carbon fixation by Calvin cycle 6
bna01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 8
bna01230 Biosynthesis of amino acids 8
bna00220 Arginine biosynthesis 6
bna00710 Carbon fixation by Calvin cycle 6
bna01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 4
cre01200 Carbon metabolism 4
cre01230 Biosynthesis of amino acids 2
cre00030 Pentose phosphate pathway 2
cre00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00030 Pentose phosphate pathway 3
sbi01200 Carbon metabolism 3
sbi00195 Photosynthesis 3
sbi00480 Glutathione metabolism 2
sbi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot01230 Biosynthesis of amino acids 5
sot00910 Nitrogen metabolism 4
sot00250 Alanine, aspartate and glutamate metabolism 2
sot00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit02010 ABC transporters 2
cit04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00564 Glycerophospholipid metabolism 2
bdi00565 Ether lipid metabolism 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 8
nta01230 Biosynthesis of amino acids 8
nta00670 One carbon pool by folate 6
nta00999 Biosynthesis of various plant secondary metabolites 6
nta01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 8
nta01230 Biosynthesis of amino acids 8
nta00670 One carbon pool by folate 6
nta00999 Biosynthesis of various plant secondary metabolites 6
nta01240 Biosynthesis of cofactors 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835427 100784900 100819513 101254281 4324398 4339561 103651348 103857079 100246868 18103637 7453835 25482265 123078967 123070558 123444122 107929529 107947250 111213076 106387482 5718661 8074568 8068026 102580516 102620225 100844360 100832857 107822887 107809098
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