ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101254617	cysteine synthase, chloroplastic/chromoplastic
sly-r.6	101254617	cysteine synthase, chloroplastic/chromoplastic
sly-u.5	101244415	cysteine synthase
sly-u.5	101246567	cysteine synthase
sly-u.5	101246283	cysteine synthase
ath-u.5	OASC	O-acetylserine (thiol) lyase isoform C
ath-u.5	DES1	L-cysteine desulfhydrase 1
ath-u.5	CYSD2	cysteine synthase D2
gma-u.5	100794958	cysteine synthase-like
gma-u.5	OAS-TL7	cysteine synthase
gma-u.5	OAS-TL4	OAS-TL4 cysteine synthase
vvi-u.5	100255091	bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial
vvi-u.5	109121422	cysteine synthase-like
vvi-u.5	100267217	cysteine synthase
ppo-u.5	7457347	bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial
ppo-u.5	18104598	cysteine synthase, chloroplastic/chromoplastic
mtr-u.5	11410728	cysteine synthase
mtr-u.5	11436945	bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial
mtr-u.5	11438453	S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent), chloroplastic
osa-u.5	4335048	bifunctional L-3-cyanoalanine synthase/cysteine synthase 2, mitochondrial
osa-u.5	4334101	cysteine synthase-like
osa-u.5	4327819	cysteine synthase
zma-u.5	100216722	beta-cyanoalanine synthase
zma-u.5	103651084	cysteine synthase-like

Top 50 coexpressed genes to 101254617 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101254617 (sly-u.5 coexpression data)

CoexMap"101254617"

[Cytoscape]

Annotation

functional annotation

KEGG

sly00270 [list] [network] Cysteine and methionine metabolism (118 genes)

sly00920 [list] [network] Sulfur metabolism (35 genes)

sly01200 [list] [network] Carbon metabolism (290 genes)

sly01230 [list] [network] Biosynthesis of amino acids (226 genes)

sly01320 [list] [network] Sulfur cycle (19 genes)

GO BP

GO:0009860 [list] [network] pollen tube growth	(3 genes)	IEA
GO:0009567 [list] [network] double fertilization forming a zygote and endosperm	(6 genes)	IEA
GO:0006535 [list] [network] cysteine biosynthetic process from serine	(13 genes)	IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(5127 genes)

IEA

GO MF

GO:0004124 [list] [network] cysteine synthase activity

(8 genes)

IEA

Protein

XP_004244764.1 [sequence] [blastp]
XP_019070813.1 [sequence] [blastp]
XP_069144124.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, vacu 1, nucl 1, extr 1, E.R. 1	(predict for XP_004244764.1)
chlo 8, nucl 1, extr 1, E.R. 1	(predict for XP_019070813.1)
nucl 6, cyto 2, mito 1, extr 1	(predict for XP_069144124.1)

Subcellular
localization
TargetP

chlo 9	(predict for XP_004244764.1)
chlo 9	(predict for XP_019070813.1)
scret 6, other 5	(predict for XP_069144124.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101254617	sly-r.6 for 101254617	sly-u.5 for 101244415	sly-u.5 for 101246567	sly-u.5 for 101246283	ath-u.5 for OASC	ath-u.5 for DES1	ath-u.5 for CYSD2	gma-u.5 for 100794958	gma-u.5 for OAS-TL7	gma-u.5 for OAS-TL4	vvi-u.5 for 100255091	vvi-u.5 for 109121422	vvi-u.5 for 100267217	ppo-u.5 for 7457347	ppo-u.5 for 18104598	mtr-u.5 for 11410728	mtr-u.5 for 11436945	mtr-u.5 for 11438453	osa-u.5 for 4335048	osa-u.5 for 4334101	osa-u.5 for 4327819	zma-u.5 for 100216722	zma-u.5 for 103651084

Ortholog

Ortholog ID: 256

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

OASA1

OASB

OAS-TL3

OAS-TL4

Function^*

cysteine synthase-like

bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial

cysteine synthase-like

bifunctional L-3-cyanoalanine synthase/cysteine synthase 2, mitochondrial

cysteine synthase, chloroplastic/chromoplastic-like

O-acetylserine (thiol) lyase (OAS-TL) isoform A1

O-acetylserine (thiol) lyase B

OAS-TL3 cysteine synthase

OAS-TL4 cysteine synthase

bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial

bifunctional L-3-cyanoalanine synthase/cysteine synthase D2

cysteine synthase

cysteine synthase, chloroplastic/chromoplastic

cysteine synthase

cysteine synthase, chloroplastic/chromoplastic

bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial-like

cysteine synthase-like

cysteine synthase 1

bifunctional L-3-cyanoalanine synthase/cysteine synthase, mitochondrial

cysteine synthase-like

bifunctional L-3-cyanoalanine synthase/cysteine synthase 2, mitochondrial

cysteine synthase

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00909	Sesquiterpenoid and triterpenoid biosynthesis	2
sly01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01230	Biosynthesis of amino acids	10
sly00400	Phenylalanine, tyrosine and tryptophan biosynthesis	8
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00270	Cysteine and methionine metabolism	4
sot00920	Sulfur metabolism	4
sot01200	Carbon metabolism	4
sot01230	Biosynthesis of amino acids	4
sot01320	Sulfur cycle	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00270	Cysteine and methionine metabolism	4
sot00920	Sulfur metabolism	4
sot01200	Carbon metabolism	4
sot01230	Biosynthesis of amino acids	4
sot01320	Sulfur cycle	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01200	Carbon metabolism	7
nta01230	Biosynthesis of amino acids	7
nta01310	Nitrogen cycle	5
nta00270	Cysteine and methionine metabolism	4
nta00460	Cyanoamino acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta01200	Carbon metabolism	4
nta01230	Biosynthesis of amino acids	4
nta03060	Protein export	2
nta00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	13
ath04145	Phagosome	12
ath04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01230	Biosynthesis of amino acids	8
ath00920	Sulfur metabolism	5
ath01320	Sulfur cycle	4
ath01210	2-Oxocarboxylic acid metabolism	4
ath01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00900	Terpenoid backbone biosynthesis	5
gma00270	Cysteine and methionine metabolism	3
gma01200	Carbon metabolism	3
gma00906	Carotenoid biosynthesis	3
gma00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	4
gma01230	Biosynthesis of amino acids	4
gma00860	Porphyrin metabolism	2
gma01240	Biosynthesis of cofactors	2
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	4
bra00920	Sulfur metabolism	3
bra00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
bra01240	Biosynthesis of cofactors	3
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	5
vvi01230	Biosynthesis of amino acids	3
vvi00630	Glyoxylate and dicarboxylate metabolism	3
vvi04146	Peroxisome	3
vvi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	3
vvi03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	6
ppo00190	Oxidative phosphorylation	5
ppo01230	Biosynthesis of amino acids	5
ppo00010	Glycolysis / Gluconeogenesis	4
ppo00710	Carbon fixation by Calvin cycle	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	3
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	6
mtr00910	Nitrogen metabolism	5
mtr01230	Biosynthesis of amino acids	4
mtr00620	Pyruvate metabolism	3
mtr00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04814	Motor proteins	4
ghi00270	Cysteine and methionine metabolism	2
ghi00920	Sulfur metabolism	2
ghi01200	Carbon metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	4
ghi04145	Phagosome	4
ghi00270	Cysteine and methionine metabolism	3
ghi00920	Sulfur metabolism	3
ghi01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01200	Carbon metabolism	7
bna01230	Biosynthesis of amino acids	7
bna00270	Cysteine and methionine metabolism	6
bna00920	Sulfur metabolism	6
bna01320	Sulfur cycle	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01200	Carbon metabolism	11
bna01230	Biosynthesis of amino acids	11
bna00010	Glycolysis / Gluconeogenesis	7
bna00270	Cysteine and methionine metabolism	6
bna00920	Sulfur metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	6
cit00380	Tryptophan metabolism	5
cit00270	Cysteine and methionine metabolism	2
cit00460	Cyanoamino acid metabolism	2
cit00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	6
osa04146	Peroxisome	3
osa01230	Biosynthesis of amino acids	3
osa00190	Oxidative phosphorylation	3
osa00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00561	Glycerolipid metabolism	2
osa00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	8
zma01200	Carbon metabolism	6
zma00270	Cysteine and methionine metabolism	5
zma00710	Carbon fixation by Calvin cycle	4
zma00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	9
tae01230	Biosynthesis of amino acids	9
tae00710	Carbon fixation by Calvin cycle	6
tae00920	Sulfur metabolism	4
tae01320	Sulfur cycle	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	4
tae04142	Lysosome	4
tae04145	Phagosome	4
tae00270	Cysteine and methionine metabolism	3
tae00920	Sulfur metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	4
hvu00190	Oxidative phosphorylation	3
hvu04145	Phagosome	3
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00270	Cysteine and methionine metabolism	3
bdi01230	Biosynthesis of amino acids	3
bdi01240	Biosynthesis of cofactors	2
bdi00250	Alanine, aspartate and glutamate metabolism	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	7
bdi01240	Biosynthesis of cofactors	3
bdi00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04120	Ubiquitin mediated proteolysis	2
cre01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00920	Sulfur metabolism	7
cre01320	Sulfur cycle	4
cre00270	Cysteine and methionine metabolism	2
cre01200	Carbon metabolism	2
cre01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

101245992

101253940

102603277

102592568

107788814

107817517

827145

818978

100101899

100101900

103862824

103854642

100247043

100264196

18110977

18104598

11443458

11410728

107928580

107899147

106447111

106391818

127901209

4334101

4327479

100280321

123122184

123110159

123431448

123452200

8085383

100834135

100839817

5721691

5717636

The preparation time of this page was 0.1 [sec].


Species	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	3	3	3	2	3	3	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101254617 (sly-u.5 coexpression data)

Top 50 enrichment test to 101254617 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**