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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101255562   vacuolar protein sorting-associated protein 28 homolog 2-like 
 sly-r.6   101255562   vacuolar protein sorting-associated protein 28 homolog 2-like 
 sly-m.5   101255562   vacuolar protein sorting-associated protein 28 homolog 2-like 
 sly-u.5   101258121   vacuolar protein sorting-associated protein 28 homolog 2 
 ath-u.5   VPS28-2   Vacuolar protein sorting-associated protein VPS28 family protein 
 ath-u.5   VPS28-1   vacuolar protein sorting-associated protein-like protein 
 gma-u.5   100814037   vacuolar protein sorting-associated protein 28 homolog 2 
 gma-u.5   100500366   vacuolar protein sorting-associated protein 28 homolog 2 
 vvi-u.5   100261868   vacuolar protein sorting-associated protein 28 homolog 2 
 ppo-u.5   7494341   vacuolar protein sorting-associated protein 28 homolog 1 
 ppo-u.5   7495265   vacuolar protein sorting-associated protein 28 homolog 1 
 mtr-u.5   11439388   vacuolar protein sorting-associated protein 28 homolog 1 
 osa-u.5   4327840   vacuolar protein sorting-associated protein 28 homolog 1 
 zma-u.5   103651140   vacuolar protein sorting-associated protein 28 homolog 1 
 zma-u.5   100284642   VPS28-like protein 

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Top 50 coexpressed genes to 101255562 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101255562 (sly-u.5 coexpression data)

CoexMap"101255562"


slyLOC101255562 | Entrez gene ID : 101255562      
Species sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 4 2 2 1 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04144 [list] [network] Endocytosis (167 genes)
GO BP
GO:0043328 [list] [network] protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway  (15 genes)  IEA  
GO CC
GO:0000813 [list] [network] ESCRT I complex  (10 genes)  IEA  
GO MF
GO:0044877 [list] [network] protein-containing complex binding  (215 genes)  IEA  
Protein XP_004234483.1 [sequence] [blastp]
XP_010317665.1 [sequence] [blastp]
XP_025885588.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  nucl_plas 4,  plas 2,  chlo_mito 2  (predict for XP_004234483.1)
chlo 4,  nucl 4,  nucl_plas 4,  plas 2,  chlo_mito 2  (predict for XP_010317665.1)
chlo 4,  nucl 4,  nucl_plas 4,  plas 2,  chlo_mito 2  (predict for XP_025885588.1)
Subcellular
localization
TargetP
other 9  (predict for XP_004234483.1)
other 9  (predict for XP_010317665.1)
other 9  (predict for XP_025885588.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101255562
sly-r.6
for
101255562
sly-m.5
for
101255562
sly-u.5
for
101258121
ath-u.5
for
VPS28-2
ath-u.5
for
VPS28-1
gma-u.5
for
100814037
gma-u.5
for
100500366
vvi-u.5
for
100261868
ppo-u.5
for
7494341
ppo-u.5
for
7495265
mtr-u.5
for
11439388
osa-u.5
for
4327840
zma-u.5
for
103651140
zma-u.5
for
100284642


Ortholog ID: 4756
Species sly sly sot sot nta nta ath ath gma gma bra bra vvi ppo ppo mtr ghi bna bna cit osa zma zma tae tae sbi bdi cre
Symbol LOC101258121 LOC101255562 LOC102587158 LOC102591419 LOC107769174 LOC107830635 VPS28-1 VPS28-2 LOC100500366 LOC100814037 LOC103839783 LOC103834189 LOC100261868 LOC7495265 LOC7494341 LOC11439388 LOC107925293 LOC106375726 LOC106364465 LOC102625108 LOC4327840 LOC103651140 LOC100284642 LOC123071007 LOC123079382 LOC8082356 LOC106865427 CHLRE_16g678100v5
Function* vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2-like vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2-like vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein-like protein Vacuolar protein sorting-associated protein VPS28 family protein vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 VPS28-like protein vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 10
nta03272 Virion - Hepatitis viruses 4
nta03250 Viral life cycle - HIV-1 2
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 6
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 3
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 5
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo04144 Endocytosis 3
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 4
ppo04626 Plant-pathogen interaction 3
ppo04120 Ubiquitin mediated proteolysis 3
ppo03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
mtr04144 Endocytosis 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 6
ghi03272 Virion - Hepatitis viruses 4
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 4
bna00230 Purine metabolism 2
bna01232 Nucleotide metabolism 2
bna04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 2
bna04075 Plant hormone signal transduction 2
bna00061 Fatty acid biosynthesis 2
bna00071 Fatty acid degradation 2
bna01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 5
cit04141 Protein processing in endoplasmic reticulum 3
cit04130 SNARE interactions in vesicular transport 2
cit03060 Protein export 2
cit03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 3
bdi04120 Ubiquitin mediated proteolysis 3
bdi04141 Protein processing in endoplasmic reticulum 3
bdi04144 Endocytosis 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 8
cre03272 Virion - Hepatitis viruses 4
cre04130 SNARE interactions in vesicular transport 3
cre03250 Viral life cycle - HIV-1 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101258121 101255562 102587158 102591419 107769174 107830635 828241 825842 100500366 100814037 103839783 103834189 100261868 7495265 7494341 11439388 107925293 106375726 106364465 102625108 4327840 103651140 100284642 123071007 123079382 8082356 106865427 5721514
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