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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   LHCP   chlorophyll a-b binding protein CP24 10B, chloroplastic-like 
 sly-r.6   LHCP   chlorophyll a-b binding protein CP24 10B, chloroplastic-like 
 sly-u.5   CAB-10A   Chlorophyll a-b binding protein CP24 10A, chloroplastic 
 ath-u.5   LHCB6   light harvesting complex photosystem II subunit 6 
 gma-u.5   100783223   chlorophyll a-b binding protein CP24 10A, chloroplastic 
 gma-u.5   100527463   light harvesting complex photosystem II subunit 
 gma-u.5   100500118   light harvesting complex photosystem II subunit 6 
 vvi-u.5   100241887   chlorophyll a-b binding protein CP24 10A, chloroplastic-like 
 ppo-u.5   7473011   chlorophyll a-b binding protein CP24 10A, chloroplastic 
 mtr-u.5   11430346   chlorophyll a-b binding protein CP24 10A, chloroplastic 
 osa-u.5   4336028   chlorophyll a-b binding protein CP24, chloroplastic 
 zma-u.5   100273752   uncharacterized LOC100273752 
 zma-u.5   542321   light harvesting chlorophyll a/b binding protein 6 

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Top 50 coexpressed genes to LHCP (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LHCP (sly-u.5 coexpression data)

CoexMap"101256131"


slyLHCP | Entrez gene ID : 101256131      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 1 3 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00196 [list] [network] Photosynthesis - antenna proteins (29 genes)
GO BP
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (29 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (118 genes)  IEA  
GO CC
GO:0016020 [list] [network] membrane  (3085 genes)  IEA  
GO MF
Protein NP_001296291.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1  (predict for NP_001296291.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001296291.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
LHCP

.
sly-r.6
for
LHCP

.
sly-u.5
for
CAB-10A

.
ath-u.5
for
LHCB6

.
gma-u.5
for
100783223

.
gma-u.5
for
100527463

.
gma-u.5
for
100500118

.
vvi-u.5
for
100241887

.
ppo-u.5
for
7473011

.
mtr-u.5
for
11430346

.
osa-u.5
for
4336028

.
zma-u.5
for
100273752

.
zma-u.5
for
542321

.


Ortholog ID: 5614
Species ath gma gma sly sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol LHCB6 LOC100527463 LOC100783223 CAB-10A LHCP LOC4336028 LOC100273752 LOC103842881 LOC103836017 LOC100241887 LOC7473011 LOC11430346 LOC123189406 LOC123053510 LOC123426891 LOC107898919 LOC121214817 LOC106346808 LOC106367078 LOC8085855 LOC102586172 LOC102586836 LOC102609463 LOC100842091 LOC107792047 LOC107830507
Function* light harvesting complex photosystem II subunit 6 light harvesting complex photosystem II subunit chlorophyll a-b binding protein CP24 10A, chloroplastic Chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10B, chloroplastic-like chlorophyll a-b binding protein CP24, chloroplastic uncharacterized LOC100273752 chlorophyll a-b binding protein CP24, chloroplastic chlorophyll a-b binding protein CP24 10B, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic-like chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10B, chloroplastic chlorophyll a-b binding protein CP24 10B, chloroplastic chlorophyll a-b binding protein CP24 10B, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24, chloroplastic-like chlorophyll a-b binding protein CP24, chloroplastic-like chlorophyll a-b binding protein CP24 10B, chloroplastic chlorophyll a-b binding protein CP24 10B, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic-like chlorophyll a-b binding protein CP24 10A, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 11
ath00196 Photosynthesis - antenna proteins 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 15
gma00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 13
gma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 8
osa00195 Photosynthesis 5
osa00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 12
zma00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 9
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00196 Photosynthesis - antenna proteins 13
vvi00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 8
ppo00196 Photosynthesis - antenna proteins 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00196 Photosynthesis - antenna proteins 7
mtr00195 Photosynthesis 6
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 10
tae00860 Porphyrin metabolism 6
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 11
tae00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00196 Photosynthesis - antenna proteins 9
hvu00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 12
ghi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 13
sbi00195 Photosynthesis 4
sbi00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 9
sot00195 Photosynthesis 6
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 12
sot00860 Porphyrin metabolism 4
sot00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
cit00196 Photosynthesis - antenna proteins 8
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00196 Photosynthesis - antenna proteins 12
bdi00195 Photosynthesis 5
bdi00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 7
nta00195 Photosynthesis 4
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 4
nta00195 Photosynthesis 4
nta00860 Porphyrin metabolism 2
nta00730 Thiamine metabolism 2
nta00900 Terpenoid backbone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838151 100527463 100783223 101256629 101256131 4336028 100273752 103842881 103836017 100241887 7473011 11430346 123189406 123053510 123426891 107898919 121214817 106346808 106367078 8085855 102586172 102586836 102609463 100842091 107792047 107830507
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