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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101256553   pentatricopeptide repeat-containing protein At3g50420 
 sly-r.6   101256553   pentatricopeptide repeat-containing protein At3g50420 
 ath-u.5   AT3G50420   Pentatricopeptide repeat (PPR) superfamily protein 
 mtr-u.5   11426309   pentatricopeptide repeat-containing protein At3g50420 
 osa-u.5   4337367   pentatricopeptide repeat-containing protein At3g50420 
 zma-u.5   103642187   pentatricopeptide repeat-containing protein At3g50420 

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Top 50 coexpressed genes to 101256553 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101256553 (sly-u.5 coexpression data)

CoexMap"101256553"


slyLOC101256553 | Entrez gene ID : 101256553    
Species sly ath mtr osa zma bdi hvu bra vvi cit gma bna ppo sbi ghi sot nta cre tae
Paralog 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (280 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004232065.2 [sequence] [blastp]
XP_004233642.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_004232065.2)
chlo 9  (predict for XP_004233642.2)
Subcellular
localization
TargetP
other 7  (predict for XP_004232065.2)
chlo 4  (predict for XP_004233642.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101256553
sly-r.6
for
101256553
ath-u.5
for
AT3G50420
mtr-u.5
for
11426309
osa-u.5
for
4337367
zma-u.5
for
103642187


Ortholog ID: 12204
Species sly sot nta nta ath bra mtr ghi ghi cit osa zma tae hvu sbi bdi
Symbol LOC101256553 LOC102598084 LOC107814600 LOC107765236 AT3G50420 LOC103860653 LOC11426309 LOC107945312 LOC107933042 LOC102614584 LOC4337367 LOC103642187 LOC123190993 LOC123428911 LOC8085847 LOC100834263
Function* pentatricopeptide repeat-containing protein At3g50420 pentatricopeptide repeat-containing protein At3g50420 pentatricopeptide repeat-containing protein At3g50420-like pentatricopeptide repeat-containing protein At3g50420-like Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At3g50420 pentatricopeptide repeat-containing protein At3g50420 pentatricopeptide repeat-containing protein At3g50420 pentatricopeptide repeat-containing protein At3g50420 pentatricopeptide repeat-containing protein At3g50420 pentatricopeptide repeat-containing protein At3g50420 pentatricopeptide repeat-containing protein At3g50420 pentatricopeptide repeat-containing protein At3g50420 pentatricopeptide repeat-containing protein At3g50420-like pentatricopeptide repeat-containing protein At3g50420 pentatricopeptide repeat-containing protein At3g50420
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 2
mtr00860 Porphyrin metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00250 Alanine, aspartate and glutamate metabolism 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu03010 Ribosome 2
hvu01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101256553 102598084 107814600 107765236 824206 103860653 11426309 107945312 107933042 102614584 4337367 103642187 123190993 123428911 8085847 100834263
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