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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT2G28230   TATA-binding related factor (TRF) of subunit 20 of Mediator complex 
 gma-u.5   100814806   uncharacterized LOC100814806 
 gma-u.5   100794645   mediator of RNA polymerase II transcription subunit 20a 
 vvi-u.5   100247363   mediator of RNA polymerase II transcription subunit 20a 
 ppo-u.5   18100353   mediator of RNA polymerase II transcription subunit 20a 
 mtr-u.5   25494183   mediator of RNA polymerase II transcription subunit 20a 
 mtr-u.5   25486902   mediator of RNA polymerase II transcription subunit 20a 
 osa-u.5   4347187   mediator of RNA polymerase II transcription subunit 20a 
 zma-u.5   100276988   uncharacterized LOC100276988 

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Top 50 coexpressed genes to AT2G28230 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G28230 (ath-u.5 coexpression data)

CoexMap"101257317"


slyLOC101257317 | Entrez gene ID : 101257317      
Species ath gma vvi ppo mtr osa zma hvu bna sly cit bra ghi sbi bdi nta tae cre sot
Paralog 1 2 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (493 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (47 genes)  IEA  
GO MF
GO:0003713 [list] [network] transcription coactivator activity  (45 genes)  IEA  
Protein XP_010327599.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto_nucl 4,  cyto 3,  mito 1,  plas 1,  golg_plas 1  (predict for XP_010327599.1)
Subcellular
localization
TargetP
mito 4  (predict for XP_010327599.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AT2G28230
gma-u.5
for
100814806
gma-u.5
for
100794645
vvi-u.5
for
100247363
ppo-u.5
for
18100353
mtr-u.5
for
25494183
mtr-u.5
for
25486902
osa-u.5
for
4347187
zma-u.5
for
100276988


Ortholog ID: 4198
Species sot nta nta gma gma bra vvi ppo mtr mtr ghi ghi bna bna cit osa zma tae tae hvu sbi bdi cre
Symbol LOC102597436 LOC107777337 LOC107829627 LOC100794645 LOC100814806 LOC103829718 LOC100247363 LOC18100353 LOC25486902 LOC25494183 LOC107931991 LOC107893356 LOC125594762 LOC106396345 LOC102627852 LOC4347187 LOC100276988 LOC123111941 LOC123121498 LOC123397543 LOC110432278 LOC100834966 CHLRE_11g476900v5
Function* mediator of RNA polymerase II transcription subunit 20a-like mediator of RNA polymerase II transcription subunit 20a-like mediator of RNA polymerase II transcription subunit 20a-like mediator of RNA polymerase II transcription subunit 20a uncharacterized LOC100814806 mediator of RNA polymerase II transcription subunit 20a mediator of RNA polymerase II transcription subunit 20a mediator of RNA polymerase II transcription subunit 20a mediator of RNA polymerase II transcription subunit 20a mediator of RNA polymerase II transcription subunit 20a mediator of RNA polymerase II transcription subunit 20a mediator of RNA polymerase II transcription subunit 20a mediator of RNA polymerase II transcription subunit 20a mediator of RNA polymerase II transcription subunit 20a mediator of RNA polymerase II transcription subunit 20a mediator of RNA polymerase II transcription subunit 20a uncharacterized LOC100276988 mediator of RNA polymerase II transcription subunit 20a mediator of RNA polymerase II transcription subunit 20a mediator of RNA polymerase II transcription subunit 20a-like mediator of RNA polymerase II transcription subunit 20a-like mediator of RNA polymerase II transcription subunit 20a uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 4
vvi04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 4
ghi04130 SNARE interactions in vesicular transport 2
ghi03040 Spliceosome 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 4
ghi03010 Ribosome 4
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae04075 Plant hormone signal transduction 2
tae00520 Amino sugar and nucleotide sugar metabolism 2
tae01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102597436 107777337 107829627 100794645 100814806 103829718 100247363 18100353 25486902 25494183 107931991 107893356 125594762 106396345 102627852 4347187 100276988 123111941 123121498 123397543 110432278 100834966 5722857
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