ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	101257868	protein PHYTOCHROME-DEPENDENT LATE-FLOWERING
sly-r.6	101257868	protein PHYTOCHROME-DEPENDENT LATE-FLOWERING
ath-u.5	AT1G72390	nuclear receptor coactivator
gma-u.5	100814582	protein PHYTOCHROME-DEPENDENT LATE-FLOWERING
gma-u.5	100810803	protein PHYTOCHROME-DEPENDENT LATE-FLOWERING
vvi-u.5	100265246	protein PHYTOCHROME-DEPENDENT LATE-FLOWERING
ppo-u.5	7475675	protein PHYTOCHROME-DEPENDENT LATE-FLOWERING
ppo-u.5	18094701	protein PHYTOCHROME-DEPENDENT LATE-FLOWERING
mtr-u.5	11427487	protein PHYTOCHROME-DEPENDENT LATE-FLOWERING
mtr-u.5	25502289	protein PHYTOCHROME-DEPENDENT LATE-FLOWERING
mtr-u.5	11434056	protein PHYTOCHROME-DEPENDENT LATE-FLOWERING
osa-u.5	4348528	protein PHYTOCHROME-DEPENDENT LATE-FLOWERING
zma-u.5	103654689	protein PHYTOCHROME-DEPENDENT LATE-FLOWERING

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(493 genes)

IEA

GO CC

GO:0000124 [list] [network] SAGA complex

(16 genes)

IEA

GO MF

GO:0003712 [list] [network] transcription coregulator activity

(132 genes)

IEA

Protein

XP_004241848.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 1, plas 1, cysk 1, cysk_plas 1

(predict for XP_004241848.1)

Subcellular
localization
TargetP

other 5

(predict for XP_004241848.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101257868	sly-r.6 for 101257868	ath-u.5 for AT1G72390	gma-u.5 for 100814582	gma-u.5 for 100810803	vvi-u.5 for 100265246	ppo-u.5 for 7475675	ppo-u.5 for 18094701	mtr-u.5 for 11427487	mtr-u.5 for 25502289	mtr-u.5 for 11434056	osa-u.5 for 4348528	zma-u.5 for 103654689

Ortholog

Ortholog ID: 7093

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

protein PHYTOCHROME-DEPENDENT LATE-FLOWERING

mediator of RNA polymerase II transcription subunit 15a

protein PHYTOCHROME-DEPENDENT LATE-FLOWERING-like

nuclear receptor coactivator

protein PHYTOCHROME-DEPENDENT LATE-FLOWERING

protein PHYTOCHROME-DEPENDENT LATE-FLOWERING-like

protein PHYTOCHROME-DEPENDENT LATE-FLOWERING

uncharacterized LOC8067871

mediator of RNA polymerase II transcription subunit 15a

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04626	Plant-pathogen interaction	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04626	Plant-pathogen interaction	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03250	Viral life cycle - HIV-1	2
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	2
ghi03060	Protein export	2
ghi03013	Nucleocytoplasmic transport	2
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	2
ghi03060	Protein export	2
ghi03013	Nucleocytoplasmic transport	2
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3
tae04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04148	Efferocytosis	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

101257868

102598206

107806008

107828181

843571

100810803

100814582

103831748

103852779

100265246

18094701

7475675

11434056

25502289

107906063

107958373

106433048

106354212

102613498

4348528

103654689

123180830

123042372

123428286

8067871

100825324

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 101257868 (sly-u.5 coexpression data)

Top 50 enrichment test to 101257868 (sly-u.5 coexpression data)


Species	sly	ath	gma	vvi	ppo	mtr	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	2	1	2	1	2	3	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101257868 (sly-u.5 coexpression data)

Top 50 enrichment test to 101257868 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**