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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101257965   mediator of RNA polymerase II transcription subunit 23 
 sly-r.6   101257965   mediator of RNA polymerase II transcription subunit 23 
 ath-u.5   AT1G23230   mediator of RNA polymerase II transcription subunit 
 gma-u.5   100798789   mediator of RNA polymerase II transcription subunit 23 
 vvi-u.5   100262719   mediator of RNA polymerase II transcription subunit 23 
 ppo-u.5   7482905   mediator of RNA polymerase II transcription subunit 23 
 mtr-u.5   25482512   mediator of RNA polymerase II transcription subunit 23 
 osa-u.5   4330633   mediator of RNA polymerase II transcription subunit 23 
 zma-u.5   100384269   uncharacterized LOC100384269 

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Top 50 coexpressed genes to 101257965 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101257965 (sly-u.5 coexpression data)

CoexMap"101257965"


slyLOC101257965 | Entrez gene ID : 101257965    
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010628 [list] [network] positive regulation of gene expression  (29 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (493 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (47 genes)  IEA  
GO:0005667 [list] [network] transcription regulator complex  (126 genes)  IEA  
GO MF
Protein XP_010321042.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  mito 1,  vacu 1,  E.R. 1,  cysk 1,  E.R._vacu 1  (predict for XP_010321042.2)
Subcellular
localization
TargetP
chlo 4,  other 3  (predict for XP_010321042.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101257965

.
sly-r.6
for
101257965

.
ath-u.5
for
AT1G23230

.
gma-u.5
for
100798789

.
vvi-u.5
for
100262719

.
ppo-u.5
for
7482905

.
mtr-u.5
for
25482512

.
osa-u.5
for
4330633

.
zma-u.5
for
100384269

.


Ortholog ID: 10473
Species ath gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta
Symbol AT1G23230 LOC100798789 LOC101257965 LOC4330633 LOC100384269 LOC103840785 LOC103829279 LOC100262719 LOC7482905 LOC25482512 LOC123138150 LOC123145406 LOC123402428 LOC107886275 LOC107909886 LOC106440989 LOC106358134 LOC8077684 LOC102586283 LOC102623116 LOC100841446 LOC107760529
Function* mediator of RNA polymerase II transcription subunit mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 uncharacterized LOC100384269 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23 mediator of RNA polymerase II transcription subunit 23
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 8
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04136 Autophagy - other 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 4
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 4
ppo04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03018 RNA degradation 2
mtr00562 Inositol phosphate metabolism 2
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03015 mRNA surveillance pathway 3
tae03040 Spliceosome 2
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03013 Nucleocytoplasmic transport 6
tae03082 ATP-dependent chromatin remodeling 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 4
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00052 Galactose metabolism 2
nta00511 Other glycan degradation 2
nta00600 Sphingolipid metabolism 2
nta00760 Nicotinate and nicotinamide metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838932 100798789 101257965 4330633 100384269 103840785 103829279 100262719 7482905 25482512 123138150 123145406 123402428 107886275 107909886 106440989 106358134 8077684 102586283 102623116 100841446 107760529
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