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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101258459   DEAD-box ATP-dependent RNA helicase 8 
 sly-r.6   101258459   DEAD-box ATP-dependent RNA helicase 8 
 sly-u.5   101253227   DEAD-box ATP-dependent RNA helicase 8 
 sly-u.5   101251630   DEAD-box ATP-dependent RNA helicase 8-like 
 ath-u.5   AT2G45810   DEA(D/H)-box RNA helicase family protein 
 ath-u.5   AT3G61240   DEA(D/H)-box RNA helicase family protein 
 ath-u.5   RH8   RNAhelicase-like 8 
 gma-u.5   100788032   DEAD-box ATP-dependent RNA helicase 8 
 gma-u.5   100801402   DEAD-box ATP-dependent RNA helicase 8 
 gma-u.5   100818905   DEAD-box ATP-dependent RNA helicase 8 
 vvi-u.5   100251721   DEAD-box ATP-dependent RNA helicase 8-like 
 vvi-u.5   100241111   DEAD-box ATP-dependent RNA helicase 8 
 ppo-u.5   7461759   DEAD-box ATP-dependent RNA helicase 8 
 ppo-u.5   7496951   DEAD-box ATP-dependent RNA helicase 8 
 mtr-u.5   11427502   DEAD-box ATP-dependent RNA helicase 8 
 mtr-u.5   11436932   DEAD-box ATP-dependent RNA helicase 8 
 osa-u.5   4330120   DEAD-box ATP-dependent RNA helicase 8-like 
 osa-u.5   4336501   DEAD-box ATP-dependent RNA helicase 6-like 
 osa-u.5   4349053   DEAD-box ATP-dependent RNA helicase 12-like 
 zma-u.5   100194030   uncharacterized LOC100194030 
 zma-u.5   100272835   putative DEAD-box ATP-dependent RNA helicase family protein 
 zma-u.5   100282580   ATP-dependent RNA helicase dhh1 

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Top 50 coexpressed genes to 101258459 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101258459 (sly-u.5 coexpression data)

CoexMap"101258459"


slyLOC101258459 | Entrez gene ID : 101258459    
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 3 3 2 2 2 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03018 [list] [network] RNA degradation (116 genes)
GO BP
GO:0034063 [list] [network] stress granule assembly  (10 genes)  IEA  
GO:0033962 [list] [network] P-body assembly  (12 genes)  IEA  
GO:0017148 [list] [network] negative regulation of translation  (28 genes)  IEA  
GO CC
GO:0010494 [list] [network] cytoplasmic stress granule  (8 genes)  IEA  
GO:0000932 [list] [network] P-body  (50 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (68 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (315 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein XP_004240107.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 3,  pero 2  (predict for XP_004240107.1)
Subcellular
localization
TargetP
mito 5,  other 3  (predict for XP_004240107.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101258459

.
sly-r.6
for
101258459

.
sly-u.5
for
101253227

.
sly-u.5
for
101251630

.
ath-u.5
for
AT2G45810

.
ath-u.5
for
AT3G61240

.
ath-u.5
for
RH8

.
gma-u.5
for
100788032

.
gma-u.5
for
100801402

.
gma-u.5
for
100818905

.
vvi-u.5
for
100251721

.
vvi-u.5
for
100241111

.
ppo-u.5
for
7461759

.
ppo-u.5
for
7496951

.
mtr-u.5
for
11427502

.
mtr-u.5
for
11436932

.
osa-u.5
for
4330120

.
osa-u.5
for
4336501

.
osa-u.5
for
4349053

.
zma-u.5
for
100194030

.
zma-u.5
for
100272835

.
zma-u.5
for
100282580

.


Ortholog ID: 1849
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol RH8 AT3G61240 LOC100788032 LOC100800861 LOC101251630 LOC101253227 LOC4336501 LOC4349053 LOC100272835 LOC100282580 LOC103830288 LOC103866240 LOC100251721 LOC100241111 LOC7461759 LOC7496951 LOC11436932 LOC11427502 LOC123189788 LOC123127839 LOC123427339 LOC123433531 LOC107957248 LOC107952921 LOC106411846 LOC106365528 CHLRE_04g223850v5 LOC8067077 LOC8067078 LOC102587039 LOC102605476 LOC102614788 LOC127901135 LOC100840583 LOC100844693 LOC107797871 LOC107762362
Function* RNAhelicase-like 8 DEA(D/H)-box RNA helicase family protein DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 8-like DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 6-like DEAD-box ATP-dependent RNA helicase 12-like putative DEAD-box ATP-dependent RNA helicase family protein ATP-dependent RNA helicase dhh1 DEAD-box ATP-dependent RNA helicase 12 DEAD-box ATP-dependent RNA helicase 6 DEAD-box ATP-dependent RNA helicase 8-like DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 6 DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 6 DEAD-box ATP-dependent RNA helicase 12 DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 12 DEAD-box ATP-dependent RNA helicase 8 uncharacterized protein DEAD-box ATP-dependent RNA helicase 12 DEAD-box ATP-dependent RNA helicase 12 DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 8-like DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 8 DEAD-box ATP-dependent RNA helicase 6 DEAD-box ATP-dependent RNA helicase 12 DEAD-box ATP-dependent RNA helicase 8-like DEAD-box ATP-dependent RNA helicase 8
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 6
ath03013 Nucleocytoplasmic transport 3
ath03250 Viral life cycle - HIV-1 3
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 7
ath03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 6
gma03050 Proteasome 3
gma03015 mRNA surveillance pathway 2
gma04382 Cornified envelope formation 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly03015 mRNA surveillance pathway 2
sly00020 Citrate cycle (TCA cycle) 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03015 mRNA surveillance pathway 2
osa04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa04712 Circadian rhythm - plant 3
osa03018 RNA degradation 3
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00730 Thiamine metabolism 2
zma01240 Biosynthesis of cofactors 2
zma00514 Other types of O-glycan biosynthesis 2
zma04142 Lysosome 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
bra00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03015 mRNA surveillance pathway 3
ppo04144 Endocytosis 2
ppo03013 Nucleocytoplasmic transport 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03018 RNA degradation 3
ppo04142 Lysosome 2
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
mtr03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 3
hvu00600 Sphingolipid metabolism 2
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03018 RNA degradation 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 8
ghi04144 Endocytosis 4
ghi04517 IgSF CAM signaling 4
ghi05100 Bacterial invasion of epithelial cells 4
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 8
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 9
bna04142 Lysosome 4
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 7
bna03015 mRNA surveillance pathway 3
bna04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03018 RNA degradation 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03018 RNA degradation 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot03083 Polycomb repressive complex 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 4
sot03013 Nucleocytoplasmic transport 3
sot03040 Spliceosome 3
sot04144 Endocytosis 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
cit03015 mRNA surveillance pathway 2
cit04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 3
bdi03018 RNA degradation 2
bdi04382 Cornified envelope formation 2
bdi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 2
nta03060 Protein export 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828042 825296 100788032 100800861 101251630 101253227 4336501 4349053 100272835 100282580 103830288 103866240 100251721 100241111 7461759 7496951 11436932 11427502 123189788 123127839 123427339 123433531 107957248 107952921 106411846 106365528 5717886 8067077 8067078 102587039 102605476 102614788 127901135 100840583 100844693 107797871 107762362
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