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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   SPA   protein SPA 
 sly-r.6   SPA   protein SPA 
 sly-m.5   SPA   protein SPA 
 ath-u.5   LQY1   DnaJ/Hsp40 cysteine-rich domain superfamily protein 
 gma-u.5   100815666   protein disulfide-isomerase LQY1, chloroplastic 
 gma-u.5   100305711   putative disulfide-isomerase LQY1 
 vvi-u.5   100267764   protein disulfide-isomerase LQY1, chloroplastic 
 ppo-u.5   7493957   protein SPA, chloroplastic 
 ppo-u.5   7479685   protein SPA, chloroplastic 
 mtr-u.5   11416394   protein SPA, chloroplastic 
 osa-u.5   4332227   protein SPA, chloroplastic 
 zma-u.5   100278360   uncharacterized LOC100278360 

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Top 50 coexpressed genes to SPA (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SPA (sly-u.5 coexpression data)

CoexMap"101259741"


slySPA | Entrez gene ID : 101259741    
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 2 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010206 [list] [network] photosystem II repair  (4 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (632 genes)  IEA  
GO MF
GO:0003756 [list] [network] protein disulfide isomerase activity  (16 genes)  IEA  
Protein NP_001307325.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  plas 1,  extr 1  (predict for NP_001307325.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001307325.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
SPA

.
sly-r.6
for
SPA

.
sly-m.5
for
SPA

.
ath-u.5
for
LQY1

.
gma-u.5
for
100815666

.
gma-u.5
for
100305711

.
vvi-u.5
for
100267764

.
ppo-u.5
for
7493957

.
ppo-u.5
for
7479685

.
mtr-u.5
for
11416394

.
osa-u.5
for
4332227

.
zma-u.5
for
100278360

.


Ortholog ID: 9881
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta
Symbol LQY1 LOC100305711 LOC100815666 SPA LOC4332227 LOC100278360 LOC103852971 LOC103832015 LOC100267764 LOC7493957 LOC7479685 LOC11416394 LOC123092754 LOC123098048 LOC123449146 LOC107938109 LOC107940713 LOC106397334 LOC106421691 LOC8073411 LOC102593418 LOC102625052 LOC100837113 LOC107794418
Function* DnaJ/Hsp40 cysteine-rich domain superfamily protein putative disulfide-isomerase LQY1 protein disulfide-isomerase LQY1, chloroplastic protein SPA protein SPA, chloroplastic uncharacterized LOC100278360 protein disulfide-isomerase LQY1, chloroplastic protein disulfide-isomerase LQY1, chloroplastic protein disulfide-isomerase LQY1, chloroplastic protein SPA, chloroplastic protein SPA, chloroplastic protein SPA, chloroplastic protein SPA, chloroplastic protein SPA, chloroplastic protein SPA, chloroplastic protein SPA, chloroplastic protein SPA, chloroplastic protein disulfide-isomerase LQY1, chloroplastic protein disulfide-isomerase LQY1, chloroplastic protein SPA, chloroplastic protein SPA, chloroplastic protein disulfide-isomerase LQY1, chloroplastic protein SPA, chloroplastic protein SPA, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 11
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 4
gma00710 Carbon fixation by Calvin cycle 3
gma01200 Carbon metabolism 3
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 7
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
sly00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 5
zma01200 Carbon metabolism 5
zma00010 Glycolysis / Gluconeogenesis 2
zma00030 Pentose phosphate pathway 2
zma00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 4
bra00196 Photosynthesis - antenna proteins 2
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 7
vvi00710 Carbon fixation by Calvin cycle 6
vvi00195 Photosynthesis 3
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 4
ppo00710 Carbon fixation by Calvin cycle 3
ppo01200 Carbon metabolism 3
ppo00196 Photosynthesis - antenna proteins 3
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 5
mtr00010 Glycolysis / Gluconeogenesis 4
mtr00710 Carbon fixation by Calvin cycle 4
mtr01230 Biosynthesis of amino acids 4
mtr00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 7
tae01200 Carbon metabolism 7
tae00710 Carbon fixation by Calvin cycle 4
tae00260 Glycine, serine and threonine metabolism 3
tae00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
tae00740 Riboflavin metabolism 3
tae00790 Folate biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 5
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 6
ghi00860 Porphyrin metabolism 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 6
sbi00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 4
sot01230 Biosynthesis of amino acids 3
sot00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sot01240 Biosynthesis of cofactors 2
sot00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
cit00010 Glycolysis / Gluconeogenesis 2
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 6
bdi00630 Glyoxylate and dicarboxylate metabolism 5
bdi00710 Carbon fixation by Calvin cycle 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843903 100305711 100815666 101259741 4332227 100278360 103852971 103832015 100267764 7493957 7479685 11416394 123092754 123098048 123449146 107938109 107940713 106397334 106421691 8073411 102593418 102625052 100837113 107794418
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