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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101260070   glycine dehydrogenase (decarboxylating), mitochondrial 
 sly-r.6   101260070   glycine dehydrogenase (decarboxylating), mitochondrial 
 sly-m.5   101260070   glycine dehydrogenase (decarboxylating), mitochondrial 
 sot-r.1   102601213   glycine dehydrogenase (decarboxylating), mitochondrial-like 
 nta-r.1   107781010   glycine dehydrogenase (decarboxylating), mitochondrial 
 nta-r.1   107783010   glycine dehydrogenase (decarboxylating), mitochondrial 
 ath-u.5   GLDP2   glycine decarboxylase P-protein 2 
 ath-u.5   GLDP1   glycine decarboxylase P-protein 1 
 gma-u.5   100777528   glycine dehydrogenase (decarboxylating), mitochondrial 
 gma-u.5   100819714   glycine dehydrogenase (decarboxylating), mitochondrial 
 gma-u.5   100814366   glycine dehydrogenase (decarboxylating), mitochondrial 
 bra-r.6   103850153   glycine dehydrogenase (decarboxylating) 1, mitochondrial 
 vvi-u.5   100266170   glycine dehydrogenase (decarboxylating), mitochondrial 
 vvi-u.5   100266280   glycine dehydrogenase (decarboxylating), mitochondrial 
 ppo-u.5   7470701   glycine dehydrogenase (decarboxylating), mitochondrial 
 mtr-u.5   11415278   glycine dehydrogenase (decarboxylating), mitochondrial 
 ghi-r.1   121218502   glycine dehydrogenase (decarboxylating), mitochondrial 
 ghi-r.1   107962876   glycine dehydrogenase (decarboxylating), mitochondrial 
 ghi-r.1   107958881   glycine dehydrogenase (decarboxylating), mitochondrial 
 bna-r.1   125609071   glycine dehydrogenase (decarboxylating) 1, mitochondrial-like 
 bna-r.1   106368767   glycine dehydrogenase (decarboxylating) 1, mitochondrial 
 bna-r.1   106364306   glycine dehydrogenase (decarboxylating) 1, mitochondrial 
 cit-r.1   102627653   glycine dehydrogenase (decarboxylating), mitochondrial 
 osa-u.5   4325932   glycine dehydrogenase (decarboxylating), mitochondrial 
 osa-u.5   4341516   glycine dehydrogenase (decarboxylating), mitochondrial 
 zma-u.5   541946   glycine dehydrogenase (decarboxylating), mitochondrial 
 tae-r.2   123061740   glycine dehydrogenase (decarboxylating) 1, mitochondrial 
 tae-r.2   123070375   glycine dehydrogenase (decarboxylating) 1, mitochondrial 
 tae-r.2   123078832   glycine dehydrogenase (decarboxylating) 1, mitochondrial 
 hvu-r.1   123444252   glycine dehydrogenase (decarboxylating) 1, mitochondrial-like 
 sbi-r.1   8066987   glycine dehydrogenase (decarboxylating), mitochondrial 
 bdi-r.1   100845191   glycine dehydrogenase (decarboxylating) 2, mitochondrial 
 cre-r.1   CHLRE_12g534800v5   uncharacterized protein 

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Top 50 coexpressed genes to 101260070 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101260070 (sly-u.5 coexpression data)

CoexMap"101260070"


slyLOC101260070 | Entrez gene ID : 101260070      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 1 2 2 3 1 2 1 1 3 3 1 2 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00260 [list] [network] Glycine, serine and threonine metabolism (67 genes)
sly00630 [list] [network] Glyoxylate and dicarboxylate metabolism (81 genes)
sly00670 [list] [network] One carbon pool by folate (40 genes)
sly00785 [list] [network] Lipoic acid metabolism (36 genes)
sly01200 [list] [network] Carbon metabolism (290 genes)
GO BP
GO:0019464 [list] [network] glycine decarboxylation via glycine cleavage system  (4 genes)  IEA  
GO CC
GO:0005960 [list] [network] glycine cleavage complex  (4 genes)  IEA  
GO:0048046 [list] [network] apoplast  (74 genes)  IEA  
GO:0009941 [list] [network] chloroplast envelope  (118 genes)  IEA  
GO:0005739 [list] [network] mitochondrion  (608 genes)  IEA  
GO MF
GO:0004375 [list] [network] glycine dehydrogenase (decarboxylating) activity  (1 genes)  IEA  
GO:0016594 [list] [network] glycine binding  (1 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (115 genes)  IEA  
Protein XP_004245101.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 8,  chlo 2  (predict for XP_004245101.1)
Subcellular
localization
TargetP
chlo 6,  mito 6  (predict for XP_004245101.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101260070
sly-r.6
for
101260070
sly-m.5
for
101260070
sot-r.1
for
102601213
nta-r.1
for
107781010
nta-r.1
for
107783010
ath-u.5
for
GLDP2
ath-u.5
for
GLDP1
gma-u.5
for
100777528
gma-u.5
for
100819714
gma-u.5
for
100814366
bra-r.6
for
103850153
vvi-u.5
for
100266170
vvi-u.5
for
100266280
ppo-u.5
for
7470701
mtr-u.5
for
11415278
ghi-r.1
for
121218502
ghi-r.1
for
107962876
ghi-r.1
for
107958881
bna-r.1
for
125609071
bna-r.1
for
106368767
bna-r.1
for
106364306
cit-r.1
for
102627653
osa-u.5
for
4325932
osa-u.5
for
4341516
zma-u.5
for
541946
tae-r.2
for
123061740
tae-r.2
for
123070375
tae-r.2
for
123078832
hvu-r.1
for
123444252
sbi-r.1
for
8066987
bdi-r.1
for
100845191
cre-r.1
for
CHLRE_12g534800v5


Ortholog ID: 6502
Species sly sot nta nta ath ath gma gma gma bra vvi vvi ppo mtr ghi ghi ghi bna bna bna cit osa osa zma tae tae tae hvu sbi bdi cre
Symbol LOC101260070 LOC102601213 LOC107781010 LOC107783010 GLDP2 GLDP1 LOC100819714 LOC100814366 LOC100795673 LOC103850153 LOC100266170 LOC100266280 LOC7470701 LOC11415278 LOC121218502 LOC107958881 LOC107907004 LOC125609071 LOC106368767 LOC106364306 LOC102627653 LOC4325932 LOC4341516 LOC541946 LOC123061740 LOC123070375 LOC123078832 LOC123444252 LOC8066987 LOC100845191 CHLRE_12g534800v5
Function* glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial-like glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine decarboxylase P-protein 2 glycine decarboxylase P-protein 1 glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating) 1, mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating) 1, mitochondrial-like glycine dehydrogenase (decarboxylating) 1, mitochondrial glycine dehydrogenase (decarboxylating) 1, mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating) 1, mitochondrial glycine dehydrogenase (decarboxylating) 1, mitochondrial glycine dehydrogenase (decarboxylating) 1, mitochondrial glycine dehydrogenase (decarboxylating) 1, mitochondrial-like glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating) 2, mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 6
sly00630 Glyoxylate and dicarboxylate metabolism 4
sly00710 Carbon fixation by Calvin cycle 4
sly00260 Glycine, serine and threonine metabolism 3
sly00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 5
sot00630 Glyoxylate and dicarboxylate metabolism 4
sot00260 Glycine, serine and threonine metabolism 2
sot00710 Carbon fixation by Calvin cycle 2
sot01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 12
nta01200 Carbon metabolism 9
nta00260 Glycine, serine and threonine metabolism 8
nta00220 Arginine biosynthesis 6
nta00250 Alanine, aspartate and glutamate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 12
nta01200 Carbon metabolism 9
nta00260 Glycine, serine and threonine metabolism 8
nta00220 Arginine biosynthesis 6
nta00250 Alanine, aspartate and glutamate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 7
ath00260 Glycine, serine and threonine metabolism 6
ath00630 Glyoxylate and dicarboxylate metabolism 6
ath01230 Biosynthesis of amino acids 5
ath00670 One carbon pool by folate 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00630 Glyoxylate and dicarboxylate metabolism 9
ath01200 Carbon metabolism 8
ath00260 Glycine, serine and threonine metabolism 7
ath01230 Biosynthesis of amino acids 5
ath00670 One carbon pool by folate 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 8
gma00630 Glyoxylate and dicarboxylate metabolism 6
gma00260 Glycine, serine and threonine metabolism 4
gma00710 Carbon fixation by Calvin cycle 4
gma01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00670 One carbon pool by folate 10
gma01200 Carbon metabolism 8
gma00260 Glycine, serine and threonine metabolism 6
gma00630 Glyoxylate and dicarboxylate metabolism 6
gma01230 Biosynthesis of amino acids 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00260 Glycine, serine and threonine metabolism 4
gma00630 Glyoxylate and dicarboxylate metabolism 4
gma00670 One carbon pool by folate 4
gma00785 Lipoic acid metabolism 4
gma01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 6
bra00010 Glycolysis / Gluconeogenesis 3
bra00260 Glycine, serine and threonine metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 3
vvi00630 Glyoxylate and dicarboxylate metabolism 3
vvi01200 Carbon metabolism 3
vvi00260 Glycine, serine and threonine metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00670 One carbon pool by folate 6
vvi00270 Cysteine and methionine metabolism 5
vvi01230 Biosynthesis of amino acids 5
vvi01200 Carbon metabolism 3
vvi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 7
ppo00710 Carbon fixation by Calvin cycle 5
ppo01230 Biosynthesis of amino acids 5
ppo01240 Biosynthesis of cofactors 3
ppo00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 5
mtr00260 Glycine, serine and threonine metabolism 4
mtr00630 Glyoxylate and dicarboxylate metabolism 4
mtr01230 Biosynthesis of amino acids 3
mtr00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi00260 Glycine, serine and threonine metabolism 6
ghi00630 Glyoxylate and dicarboxylate metabolism 6
ghi01240 Biosynthesis of cofactors 4
ghi00670 One carbon pool by folate 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi00260 Glycine, serine and threonine metabolism 6
ghi00630 Glyoxylate and dicarboxylate metabolism 6
ghi00670 One carbon pool by folate 4
ghi00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi00260 Glycine, serine and threonine metabolism 6
ghi00630 Glyoxylate and dicarboxylate metabolism 6
ghi00670 One carbon pool by folate 4
ghi00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00790 Folate biosynthesis 3
bna01240 Biosynthesis of cofactors 3
bna04981 Folate transport and metabolism 3
bna00260 Glycine, serine and threonine metabolism 3
bna00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00790 Folate biosynthesis 6
bna01240 Biosynthesis of cofactors 6
bna04981 Folate transport and metabolism 6
bna00260 Glycine, serine and threonine metabolism 3
bna00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00790 Folate biosynthesis 3
bna01240 Biosynthesis of cofactors 3
bna04981 Folate transport and metabolism 3
bna00260 Glycine, serine and threonine metabolism 3
bna00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 5
cit00630 Glyoxylate and dicarboxylate metabolism 4
cit00260 Glycine, serine and threonine metabolism 2
cit00670 One carbon pool by folate 2
cit00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00630 Glyoxylate and dicarboxylate metabolism 7
osa01200 Carbon metabolism 6
osa00260 Glycine, serine and threonine metabolism 5
osa00670 One carbon pool by folate 4
osa01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 8
osa00630 Glyoxylate and dicarboxylate metabolism 6
osa01230 Biosynthesis of amino acids 5
osa00260 Glycine, serine and threonine metabolism 5
osa00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 8
zma01200 Carbon metabolism 8
zma00630 Glyoxylate and dicarboxylate metabolism 6
zma00710 Carbon fixation by Calvin cycle 5
zma00260 Glycine, serine and threonine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 10
tae01200 Carbon metabolism 10
tae00260 Glycine, serine and threonine metabolism 9
tae01230 Biosynthesis of amino acids 7
tae00670 One carbon pool by folate 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 12
tae01200 Carbon metabolism 12
tae00260 Glycine, serine and threonine metabolism 9
tae01230 Biosynthesis of amino acids 9
tae01210 2-Oxocarboxylic acid metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 11
tae01200 Carbon metabolism 11
tae00260 Glycine, serine and threonine metabolism 9
tae01230 Biosynthesis of amino acids 8
tae00670 One carbon pool by folate 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 7
hvu00260 Glycine, serine and threonine metabolism 5
hvu00630 Glyoxylate and dicarboxylate metabolism 4
hvu01230 Biosynthesis of amino acids 4
hvu00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00360 Phenylalanine metabolism 4
sbi00940 Phenylpropanoid biosynthesis 4
sbi01200 Carbon metabolism 4
sbi01230 Biosynthesis of amino acids 4
sbi00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 9
bdi01200 Carbon metabolism 9
bdi00260 Glycine, serine and threonine metabolism 4
bdi04146 Peroxisome 4
bdi00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00630 Glyoxylate and dicarboxylate metabolism 6
cre01200 Carbon metabolism 6
cre00260 Glycine, serine and threonine metabolism 5
cre00670 One carbon pool by folate 3
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101260070 102601213 107781010 107783010 817149 829438 100819714 100814366 100795673 103850153 100266170 100266280 7470701 11415278 121218502 107958881 107907004 125609071 106368767 106364306 102627653 4325932 4341516 541946 123061740 123070375 123078832 123444252 8066987 100845191 5718509
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