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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101260139   HMG-Y-related protein B 
 sly-r.6   101260139   HMG-Y-related protein B 
 sly-m.5   101260139   HMG-Y-related protein B 
 sly-u.5   101257130   HMG-Y-related protein A 
 sly-u.5   101268754   HMG-Y-related protein A 
 sot-r.1   102597480   HMG-Y-related protein B-like 
 sot-r.1   102582893   HMG-Y-related protein A-like 
 sot-r.1   102584819   HMG-Y-related protein A-like 
 nta-r.1   107765117   HMG-Y-related protein A 
 nta-r.1   107810431   HMG-Y-related protein A-like 
 nta-r.1   107778578   HMG-Y-related protein A-like 
 ath-u.5   HMGA   high mobility group A 
 gma-u.5   100803968   HMG-Y-related protein A 
 gma-u.5   548080   HMG-Y related protein variant A 
 gma-u.5   100305747   H15 superfamily protein 
 bra-r.6   103827568   HMG-Y-related protein A 
 bra-r.6   103854054   HMG-Y-related protein A 
 vvi-u.5   100244042   HMG-Y-related protein A 
 ppo-u.5   7459767   HMG-Y-related protein B 
 ppo-u.5   7482897   HMG-Y-related protein B 
 ppo-u.5   7487391   HMG-Y-related protein A 
 mtr-u.5   11410322   HMG-Y-related protein B 
 mtr-u.5   11426698   HMG-Y-related protein A 
 ghi-r.1   107946285   HMG-Y-related protein B 
 ghi-r.1   107936810   HMG-Y-related protein A 
 ghi-r.1   107946286   HMG-Y-related protein A 
 bna-r.1   106447960   HMG-Y-related protein A 
 bna-r.1   106406902   HMG-Y-related protein A-like 
 bna-r.1   106389164   HMG-Y-related protein A-like 
 cit-r.1   102619719   HMG-Y-related protein B-like 
 cit-r.1   102619266   HMG-Y-related protein B-like 
 osa-u.5   4347003   HMG-Y-related protein A 
 osa-u.5   4345627   HMG-Y-related protein A 
 zma-u.5   541871   high mobility group I/Y-2 
 zma-u.5   100277576   uncharacterized LOC100277576 
 tae-r.2   123105044   HMG-Y-related protein A 
 tae-r.2   123122853   HMG-Y-related protein A 
 tae-r.2   123113340   HMG-Y-related protein A 
 hvu-r.1   123452257   HMG-Y-related protein A-like 
 sbi-r.1   8075642   HMG-Y-related protein A 
 bdi-r.1   100822567   HMG-Y-related protein A 
 bdi-r.1   100846746   HMG-Y-related protein A 

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Top 50 coexpressed genes to 101260139 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101260139 (sly-u.5 coexpression data)

CoexMap"101260139"


slyLOC101260139 | Entrez gene ID : 101260139    
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 5 3 3 1 3 2 1 3 2 3 3 2 2 2 3 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045910 [list] [network] negative regulation of DNA recombination  (18 genes)  IEA  
GO:0030261 [list] [network] chromosome condensation  (21 genes)  IEA  
GO:0006334 [list] [network] nucleosome assembly  (45 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1608 genes)  IEA  
GO CC
GO:0000786 [list] [network] nucleosome  (80 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (194 genes)  IEA  
GO:0000785 [list] [network] chromatin  (240 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0031492 [list] [network] nucleosomal DNA binding  (14 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (545 genes)  IEA  
Protein XP_004240031.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_004240031.1)
Subcellular
localization
TargetP
other 9  (predict for XP_004240031.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101260139
sly-r.6
for
101260139
sly-m.5
for
101260139
sly-u.5
for
101257130
sly-u.5
for
101268754
sot-r.1
for
102597480
sot-r.1
for
102582893
sot-r.1
for
102584819
nta-r.1
for
107765117
nta-r.1
for
107810431
nta-r.1
for
107778578
ath-u.5
for
HMGA
gma-u.5
for
100803968
gma-u.5
for
548080
gma-u.5
for
100305747
bra-r.6
for
103827568
bra-r.6
for
103854054
vvi-u.5
for
100244042
ppo-u.5
for
7459767
ppo-u.5
for
7482897
ppo-u.5
for
7487391
mtr-u.5
for
11410322
mtr-u.5
for
11426698
ghi-r.1
for
107946285
ghi-r.1
for
107936810
ghi-r.1
for
107946286
bna-r.1
for
106447960
bna-r.1
for
106406902
bna-r.1
for
106389164
cit-r.1
for
102619719
cit-r.1
for
102619266
osa-u.5
for
4347003
osa-u.5
for
4345627
zma-u.5
for
541871
zma-u.5
for
100277576
tae-r.2
for
123105044
tae-r.2
for
123122853
tae-r.2
for
123113340
hvu-r.1
for
123452257
sbi-r.1
for
8075642
bdi-r.1
for
100822567
bdi-r.1
for
100846746


Ortholog ID: 2855
Species sly sly sly sot sot sot nta nta nta ath gma gma gma bra bra vvi ppo ppo ppo mtr mtr ghi ghi ghi bna bna bna cit cit osa osa zma zma tae tae tae hvu sbi bdi bdi
Symbol LOC101260139 LOC101257130 LOC101268754 LOC102597480 LOC102582893 LOC102584819 LOC107778578 LOC107781199 LOC107783486 HMGA LOC100305747 LOC100802642 LOC100804682 LOC103827568 LOC103854054 LOC100244042 LOC7482897 LOC7487391 LOC18106641 LOC11410322 LOC11426698 LOC107934494 LOC107901969 LOC121219363 LOC106447960 LOC106389164 LOC106404543 LOC102619719 LOC102619266 LOC4347003 LOC4345627 LOC541871 LOC100277576 LOC123105044 LOC123122853 LOC123113340 LOC123452257 LOC8075642 LOC100822567 LOC100846746
Function* HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein B-like HMG-Y-related protein A-like HMG-Y-related protein A-like HMG-Y-related protein A-like HMG-Y-related protein A HMG-Y-related protein A-like high mobility group A H15 superfamily protein HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein B HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A-like HMG-Y-related protein A-like HMG-Y-related protein B-like HMG-Y-related protein B-like HMG-Y-related protein A HMG-Y-related protein A high mobility group I/Y-2 uncharacterized LOC100277576 HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A-like HMG-Y-related protein A HMG-Y-related protein A HMG-Y-related protein A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 4
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 4
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 3
nta01232 Nucleotide metabolism 3
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 4
ath04517 IgSF CAM signaling 4
ath04814 Motor proteins 4
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00220 Arginine biosynthesis 4
bra00250 Alanine, aspartate and glutamate metabolism 4
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00910 Nitrogen metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 3
ghi03410 Base excision repair 3
ghi03420 Nucleotide excision repair 3
ghi03430 Mismatch repair 3
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
osa04141 Protein processing in endoplasmic reticulum 2
osa04145 Phagosome 2
osa03010 Ribosome 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101260139 101257130 101268754 102597480 102582893 102584819 107778578 107781199 107783486 838055 100305747 100802642 100804682 103827568 103854054 100244042 7482897 7487391 18106641 11410322 11426698 107934494 107901969 121219363 106447960 106389164 106404543 102619719 102619266 4347003 4345627 541871 100277576 123105044 123122853 123113340 123452257 8075642 100822567 100846746
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