ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	101261379	uncharacterized LOC101261379
sly-r.6	101261379	uncharacterized LOC101261379
sly-m.5	101261379	uncharacterized LOC101261379
ath-u.5	AT5G38050	RNA polymerase II transcription elongation factor
ath-u.5	AT1G71080	RNA polymerase II transcription elongation factor
gma-u.5	100796208	uncharacterized LOC100796208
gma-u.5	100787712	ell-associated factor Eaf
vvi-u.5	100243360	ell-associated factor Eaf-like
ppo-u.5	7488390	uncharacterized LOC7488390
ppo-u.5	7487366	uncharacterized LOC7487366
ppo-u.5	7459796	uncharacterized LOC7459796
mtr-u.5	11411164	ell-associated factor Eaf
osa-u.5	4324047	uncharacterized LOC4324047
zma-u.5	100272267	RNA polymerase II transcription elongation factor
zma-u.5	100191143	uncharacterized LOC100191143

Annotation

functional annotation

KEGG

GO BP

GO:0006368 [list] [network] transcription elongation by RNA polymerase II	(21 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1608 genes)	IEA

GO CC

GO:0032783 [list] [network] super elongation complex

(1 genes)

IEA

GO MF

GO:0003711 [list] [network] transcription elongation factor activity

(1 genes)

IEA

Protein

XP_004232005.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_004232005.1)

Subcellular
localization
TargetP

other 8

(predict for XP_004232005.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101261379	sly-r.6 for 101261379	sly-m.5 for 101261379	ath-u.5 for AT5G38050	ath-u.5 for AT1G71080	gma-u.5 for 100796208	gma-u.5 for 100787712	vvi-u.5 for 100243360	ppo-u.5 for 7488390	ppo-u.5 for 7487366	ppo-u.5 for 7459796	mtr-u.5 for 11411164	osa-u.5 for 4324047	zma-u.5 for 100272267	zma-u.5 for 100191143

Ortholog

Ortholog ID: 6983

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC101261379

clumping factor B

uncharacterized LOC107831175

uncharacterized LOC107777948

RNA polymerase II transcription elongation factor

ell-associated factor Eaf

uncharacterized LOC100796208

ELL-associated factor 1

ell-associated factor Eaf-like

uncharacterized LOC7487366

uncharacterized LOC7488390

ell-associated factor Eaf

protein rtoA

ELL-associated factor 2

ELL-associated factor 1

uncharacterized LOC102628877

suppressor protein SRP40

uncharacterized LOC4324047

RNA polymerase II transcription elongation factor

uncharacterized LOC100191143

ell-associated factor Eaf

ell-associated factor Eaf-like

ELL-associated factor 1

ell-associated factor Eaf

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	5
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	2
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi03013	Nucleocytoplasmic transport	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	3
cit00190	Oxidative phosphorylation	2
cit00360	Phenylalanine metabolism	2
cit00020	Citrate cycle (TCA cycle)	2
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

101261379

102600520

107831175

107777948

843448

833785

100787712

100796208

103831637

100243360

7487366

7488390

11411164

107953924

107912768

106406181

106354124

102628877

102614066

4324047

100272267

100191143

123127377

123131055

123443678

8062971

100830930

66052722

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 101261379 (sly-u.5 coexpression data)

Top 50 enrichment test to 101261379 (sly-u.5 coexpression data)


Species	sly	ath	gma	vvi	ppo	mtr	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	3	2	2	1	3	1	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101261379 (sly-u.5 coexpression data)

Top 50 enrichment test to 101261379 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**