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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101261400   uncharacterized LOC101261400 
 sly-r.6   101261400   uncharacterized LOC101261400 
 ath-u.5   TSBtype2   tryptophan synthase beta type 2 
 gma-u.5   100802258   tryptophan synthase beta chain 2 
 vvi-u.5   100261704   uncharacterized LOC100261704 
 ppo-u.5   18107426   uncharacterized LOC18107426 
 mtr-u.5   25495527   tryptophan synthase beta chain 2 
 osa-u.5   4341584   uncharacterized LOC4341584 
 zma-u.5   109623449   uncharacterized LOC109623449 

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Top 50 coexpressed genes to 101261400 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101261400 (sly-u.5 coexpression data)

CoexMap"101261400"


slyLOC101261400 | Entrez gene ID : 101261400      
Species sly ath gma vvi ppo mtr osa zma nta bna tae bdi sot bra sbi hvu cit cre ghi
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00260 [list] [network] Glycine, serine and threonine metabolism (67 genes)
sly00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (49 genes)
sly01230 [list] [network] Biosynthesis of amino acids (226 genes)
GO BP
GO:0000162 [list] [network] L-tryptophan biosynthetic process  (16 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0052684 [list] [network] L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity  (1 genes)  IEA  
GO:0004834 [list] [network] tryptophan synthase activity  (7 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (115 genes)  IEA  
Protein XP_004253077.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cysk 3,  cyto_nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_004253077.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_004253077.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101261400

.
sly-r.6
for
101261400

.
ath-u.5
for
TSBtype2

.
gma-u.5
for
100802258

.
vvi-u.5
for
100261704

.
ppo-u.5
for
18107426

.
mtr-u.5
for
25495527

.
osa-u.5
for
4341584

.
zma-u.5
for
109623449

.


Ortholog ID: 8171
Species ath gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol TSBtype2 LOC100802258 LOC101261400 LOC4341584 LOC109623449 LOC103864163 LOC103850119 LOC100261704 LOC18107426 LOC25495527 LOC123159835 LOC123148347 LOC123412545 LOC107895427 LOC107912895 LOC106436375 LOC106376988 LOC8067674 LOC102588644 LOC102629591 LOC100844752 LOC107789189 LOC107827342
Function* tryptophan synthase beta type 2 tryptophan synthase beta chain 2 uncharacterized LOC101261400 uncharacterized LOC4341584 uncharacterized LOC109623449 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 uncharacterized LOC100261704 uncharacterized LOC18107426 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 tryptophan synthase beta chain 2-like tryptophan synthase beta chain 2 tryptophan synthase beta chain 2 uncharacterized LOC102629591 tryptophan synthase beta chain 2 uncharacterized LOC107789189 uncharacterized LOC107827342
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 2
ath00260 Glycine, serine and threonine metabolism 2
ath00071 Fatty acid degradation 2
ath04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 9
gma03020 RNA polymerase 2
gma04626 Plant-pathogen interaction 2
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 10
sly01200 Carbon metabolism 5
sly00020 Citrate cycle (TCA cycle) 4
sly01230 Biosynthesis of amino acids 4
sly04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 8
osa00250 Alanine, aspartate and glutamate metabolism 3
osa00340 Histidine metabolism 2
osa00220 Arginine biosynthesis 2
osa00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00062 Fatty acid elongation 3
zma04626 Plant-pathogen interaction 3
zma02010 ABC transporters 2
zma04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 4
mtr01200 Carbon metabolism 3
mtr01240 Biosynthesis of cofactors 2
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00520 Amino sugar and nucleotide sugar metabolism 6
tae04016 MAPK signaling pathway - plant 6
tae04146 Peroxisome 3
tae00260 Glycine, serine and threonine metabolism 3
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 3
tae00260 Glycine, serine and threonine metabolism 3
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
tae00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 7
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi04626 Plant-pathogen interaction 6
ghi00260 Glycine, serine and threonine metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi04626 Plant-pathogen interaction 6
ghi00260 Glycine, serine and threonine metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 6
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 6
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 4
sot00100 Steroid biosynthesis 3
sot00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 4
nta00260 Glycine, serine and threonine metabolism 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00061 Fatty acid biosynthesis 3
nta00260 Glycine, serine and threonine metabolism 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00010 Glycolysis / Gluconeogenesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 833841 100802258 101261400 4341584 109623449 103864163 103850119 100261704 18107426 25495527 123159835 123148347 123412545 107895427 107912895 106436375 106376988 8067674 102588644 102629591 100844752 107789189 107827342
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