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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101262197   proline--tRNA ligase, cytoplasmic-like 
 sly-r.6   101262197   proline--tRNA ligase, cytoplasmic-like 
 sly-u.5   101260238   proline--tRNA ligase, cytoplasmic 
 ath-u.5   AT3G62120   Class II aaRS and biotin synthetases superfamily protein 
 gma-u.5   100816763   proline--tRNA ligase, cytoplasmic 
 gma-u.5   100782067   proline--tRNA ligase, cytoplasmic 
 vvi-u.5   100253683   proline--tRNA ligase, cytoplasmic 
 ppo-u.5   7481445   proline--tRNA ligase, cytoplasmic 
 ppo-u.5   7486842   proline--tRNA ligase, cytoplasmic 
 mtr-u.5   11428666   proline--tRNA ligase, cytoplasmic 
 osa-u.5   4352148   proline--tRNA ligase, cytoplasmic 
 zma-u.5   103648437   proline--tRNA ligase, cytoplasmic 
 zma-u.5   100272402   Proline--tRNA ligase cytoplasmic 

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Top 50 coexpressed genes to 101262197 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101262197 (sly-u.5 coexpression data)

CoexMap"101262197"


slyLOC101262197 | Entrez gene ID : 101262197      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 1 2 1 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00970 [list] [network] Aminoacyl-tRNA biosynthesis (114 genes)
GO BP
GO:0006433 [list] [network] prolyl-tRNA aminoacylation  (3 genes)  IEA  
GO CC
GO:0017101 [list] [network] aminoacyl-tRNA synthetase multienzyme complex  (5 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0004827 [list] [network] proline-tRNA ligase activity  (3 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein XP_004235909.1 [sequence] [blastp]
XP_010318725.1 [sequence] [blastp]
XP_069151461.1 [sequence] [blastp]
XP_069151462.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  chlo 1,  mito 1,  cysk 1,  chlo_mito 1,  nucl_plas 1  (predict for XP_004235909.1)
cyto 5,  nucl 4,  mito 1,  cysk 1  (predict for XP_010318725.1)
cyto 7,  nucl 2  (predict for XP_069151461.1)
cyto 6,  nucl 1,  chlo 1,  mito 1,  cysk 1,  chlo_mito 1,  nucl_plas 1  (predict for XP_069151462.1)
Subcellular
localization
TargetP
other 9  (predict for XP_004235909.1)
other 9  (predict for XP_010318725.1)
other 9  (predict for XP_069151461.1)
other 9  (predict for XP_069151462.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101262197

.
sly-r.6
for
101262197

.
sly-u.5
for
101260238

.
ath-u.5
for
AT3G62120

.
gma-u.5
for
100816763

.
gma-u.5
for
100782067

.
vvi-u.5
for
100253683

.
ppo-u.5
for
7481445

.
ppo-u.5
for
7486842

.
mtr-u.5
for
11428666

.
osa-u.5
for
4352148

.
zma-u.5
for
103648437

.
zma-u.5
for
100272402

.


Ortholog ID: 3948
Species ath gma gma sly sly osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi nta nta
Symbol AT3G62120 LOC100816763 LOC100782067 LOC101262197 LOC101260238 LOC4352148 LOC100272402 LOC103648437 LOC103830343 LOC100253683 LOC7481445 LOC7486842 LOC11428666 LOC123181590 LOC123151141 LOC123445187 LOC107945987 LOC121230903 LOC106452003 LOC111211376 CHLRE_10g429100v5 LOC8060550 LOC8064145 LOC102578711 LOC102603089 LOC102629638 LOC102619621 LOC100845525 LOC107829030 LOC107765319
Function* Class II aaRS and biotin synthetases superfamily protein proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic Proline--tRNA ligase cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic-like uncharacterized protein proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic-like proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic proline--tRNA ligase, cytoplasmic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00020 Citrate cycle (TCA cycle) 3
gma01200 Carbon metabolism 3
gma00970 Aminoacyl-tRNA biosynthesis 3
gma03040 Spliceosome 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma00970 Aminoacyl-tRNA biosynthesis 6
gma00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly03013 Nucleocytoplasmic transport 3
sly03008 Ribosome biogenesis in eukaryotes 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 11
osa01230 Biosynthesis of amino acids 3
osa00290 Valine, leucine and isoleucine biosynthesis 2
osa00620 Pyruvate metabolism 2
osa01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 9
zma00450 Selenocompound metabolism 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 11
zma00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo00020 Citrate cycle (TCA cycle) 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 11
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 13
tae03015 mRNA surveillance pathway 3
tae03010 Ribosome 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 4
hvu00010 Glycolysis / Gluconeogenesis 3
hvu00020 Citrate cycle (TCA cycle) 3
hvu00620 Pyruvate metabolism 2
hvu00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 6
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 9
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 4
sot01230 Biosynthesis of amino acids 3
sot00970 Aminoacyl-tRNA biosynthesis 2
sot04141 Protein processing in endoplasmic reticulum 2
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit00970 Aminoacyl-tRNA biosynthesis 4
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 5
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta00540 Lipopolysaccharide biosynthesis 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta00540 Lipopolysaccharide biosynthesis 3
nta00270 Cysteine and methionine metabolism 2
nta00280 Valine, leucine and isoleucine degradation 2
nta00290 Valine, leucine and isoleucine biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825385 100816763 100782067 101262197 101260238 4352148 100272402 103648437 103830343 100253683 7481445 7486842 11428666 123181590 123151141 123445187 107945987 121230903 106452003 111211376 5728120 8060550 8064145 102578711 102603089 102629638 102619621 100845525 107829030 107765319
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