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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101262253   endonuclease III homolog 2, chloroplastic-like 
 sly-r.6   101262253   endonuclease III homolog 2, chloroplastic-like 
 sly-u.5   101248783   endonuclease III homolog 1, chloroplastic 
 sot-r.1   102596980   endonuclease III homolog 1, chloroplastic 
 sot-r.1   102595176   endonuclease III homolog 1, chloroplastic-like 
 nta-r.1   107811701   endonuclease III homolog 1, chloroplastic 
 nta-r.1   107762471   endonuclease III homolog 2, chloroplastic-like 
 nta-r.1   107798302   endonuclease III homolog 1, chloroplastic 
 ath-u.5   ATNTH1   DNA glycosylase superfamily protein 
 ath-u.5   NTH2   endonuclease III 2 
 gma-u.5   100818398   endonuclease III homolog 1, chloroplastic 
 gma-u.5   100805799   endonuclease III homolog 2, chloroplastic 
 bra-r.6   103843583   endonuclease III homolog 2, chloroplastic 
 bra-r.6   103857374   endonuclease III homolog 1, chloroplastic 
 vvi-u.5   100268015   endonuclease III homolog 1, chloroplastic 
 ppo-u.5   7469594   endonuclease III homolog 1, chloroplastic 
 mtr-u.5   11434742   endonuclease III homolog 2, chloroplastic 
 mtr-u.5   25492651   endonuclease III homolog 1, chloroplastic 
 ghi-r.1   107914710   endonuclease III homolog 1, chloroplastic 
 ghi-r.1   107910452   endonuclease III homolog 1, chloroplastic 
 ghi-r.1   107903783   endonuclease III homolog 1, chloroplastic 
 bna-r.1   106437740   endonuclease III homolog 1, chloroplastic-like 
 bna-r.1   106445698   endonuclease III homolog 1, chloroplastic 
 cit-r.1   102616863   endonuclease III homolog 1, chloroplastic-like 
 cit-r.1   102617365   endonuclease III homolog 1, chloroplastic-like 
 osa-u.5   9268162   endonuclease III homolog 1, chloroplastic 
 zma-u.5   103640763   endonuclease III homolog 1, chloroplastic 
 tae-r.2   123096165   endonuclease III homolog 1, chloroplastic 
 tae-r.2   123167902   uncharacterized LOC123167902 
 tae-r.2   123091164   endonuclease III homolog 1, chloroplastic 
 hvu-r.1   123450246   endonuclease III homolog 1, chloroplastic-like 
 sbi-r.1   8066977   endonuclease III homolog 1, chloroplastic 
 bdi-r.1   100836192   endonuclease III homolog 1, chloroplastic 
 cre-r.1   CHLRE_17g732050v5   uncharacterized protein 

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Top 50 coexpressed genes to 101262253 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101262253 (sly-u.5 coexpression data)

CoexMap"101262253"


slyLOC101262253 | Entrez gene ID : 101262253    
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 2 3 2 2 2 1 1 2 3 2 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03410 [list] [network] Base excision repair (52 genes)
GO BP
GO:0006285 [list] [network] base-excision repair, AP site formation  (8 genes)  IEA  
GO:0006284 [list] [network] base-excision repair  (29 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (40 genes)  IEA  
GO CC
GO:0042644 [list] [network] chloroplast nucleoid  (8 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0000703 [list] [network] oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity  (2 genes)  IEA  
GO:0003906 [list] [network] DNA-(apurinic or apyrimidinic site) endonuclease activity  (6 genes)  IEA  
GO:0051539 [list] [network] 4 iron, 4 sulfur cluster binding  (33 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1883 genes)  IEA  
Protein XP_010326700.1 [sequence] [blastp]
XP_019071321.1 [sequence] [blastp]
XP_025888587.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  mito 1,  plas 1,  pero 1,  nucl_plas 1,  mito_plas 1  (predict for XP_010326700.1)
nucl 5,  cyto 4  (predict for XP_019071321.1)
nucl 4,  chlo 3,  cyto 3  (predict for XP_025888587.1)
Subcellular
localization
TargetP
mito 5  (predict for XP_010326700.1)
other 9  (predict for XP_019071321.1)
other 6,  chlo 4  (predict for XP_025888587.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101262253
sly-r.6
for
101262253
sly-u.5
for
101248783
sot-r.1
for
102596980
sot-r.1
for
102595176
nta-r.1
for
107811701
nta-r.1
for
107762471
nta-r.1
for
107798302
ath-u.5
for
ATNTH1
ath-u.5
for
NTH2
gma-u.5
for
100818398
gma-u.5
for
100805799
bra-r.6
for
103843583
bra-r.6
for
103857374
vvi-u.5
for
100268015
ppo-u.5
for
7469594
mtr-u.5
for
11434742
mtr-u.5
for
25492651
ghi-r.1
for
107914710
ghi-r.1
for
107910452
ghi-r.1
for
107903783
bna-r.1
for
106437740
bna-r.1
for
106445698
cit-r.1
for
102616863
cit-r.1
for
102617365
osa-u.5
for
9268162
zma-u.5
for
103640763
tae-r.2
for
123096165
tae-r.2
for
123167902
tae-r.2
for
123091164
hvu-r.1
for
123450246
sbi-r.1
for
8066977
bdi-r.1
for
100836192
cre-r.1
for
CHLRE_17g732050v5


Ortholog ID: 5694
Species sly sly sot sot nta nta nta ath ath gma gma bra bra vvi ppo mtr mtr ghi ghi ghi bna bna cit cit osa zma tae tae tae hvu sbi bdi cre
Symbol LOC101262253 LOC101248783 LOC102596980 LOC102595176 LOC107762471 LOC107798302 LOC107814431 ATNTH1 NTH2 LOC100818398 LOC100805799 LOC103843583 LOC103857374 LOC100268015 LOC7469594 LOC11434742 LOC25492651 LOC107914710 LOC107910452 LOC107903783 LOC106437740 LOC106445698 LOC102616863 LOC102617365 LOC9268162 LOC103640763 LOC123096165 LOC123167902 LOC123086811 LOC123450246 LOC8066977 LOC100836192 CHLRE_17g732050v5
Function* endonuclease III homolog 2, chloroplastic-like endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic-like endonuclease III homolog 2, chloroplastic-like endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic DNA glycosylase superfamily protein endonuclease III 2 endonuclease III homolog 1, chloroplastic endonuclease III homolog 2, chloroplastic endonuclease III homolog 2, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 2, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic-like endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic-like endonuclease III homolog 1, chloroplastic-like endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic uncharacterized LOC123167902 endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic-like endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04146 Peroxisome 2
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
gma00908 Zeatin biosynthesis 2
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00750 Vitamin B6 metabolism 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00620 Pyruvate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna00561 Glycerolipid metabolism 3
bna00564 Glycerophospholipid metabolism 3
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 3
tae00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101262253 101248783 102596980 102595176 107762471 107798302 107814431 817703 837100 100818398 100805799 103843583 103857374 100268015 7469594 11434742 25492651 107914710 107910452 107903783 106437740 106445698 102616863 102617365 9268162 103640763 123096165 123167902 123086811 123450246 8066977 100836192 5727040
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