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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101263093   pumilio homolog 5 
 sly-r.6   101263093   pumilio homolog 5 
 ath-u.5   PUM5   pumilio 5 
 ath-u.5   PUM6   pumilio 6 
 gma-u.5   100819166   pumilio homolog 6, chloroplastic 
 gma-u.5   100811036   pumilio homolog 6, chloroplastic 
 gma-u.5   100780168   pumilio homolog 6, chloroplastic 
 vvi-u.5   100254662   pumilio domain-containing protein PPD1-like 
 ppo-u.5   18111187   pumilio homolog 6, chloroplastic 
 ppo-u.5   18100470   pumilio homolog 6, chloroplastic 
 ppo-u.5   7490841   pumilio homolog 5 
 mtr-u.5   11445389   pumilio homolog 6, chloroplastic 
 osa-u.5   4347460   pumilio homolog 5 
 osa-u.5   4346059   pumilio homolog 5 
 zma-u.5   103653177   pumilio homolog 3 
 zma-u.5   100193145   uncharacterized LOC100193145 

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Top 50 coexpressed genes to 101263093 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101263093 (sly-u.5 coexpression data)

CoexMap"101263093"


slyLOC101263093 | Entrez gene ID : 101263093      
Species sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 2 2 3 1 3 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010608 [list] [network] post-transcriptional regulation of gene expression  (112 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (315 genes)  IEA  
Protein XP_004235501.1 [sequence] [blastp]
XP_010318428.1 [sequence] [blastp]
XP_069151783.1 [sequence] [blastp]
XP_069151784.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  vacu 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_004235501.1)
nucl 7,  cyto 1,  vacu 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_010318428.1)
nucl 7,  cyto 1,  vacu 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_069151783.1)
nucl 7,  cyto 1,  vacu 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_069151784.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_004235501.1)
other 7,  chlo 3  (predict for XP_010318428.1)
other 7,  chlo 3  (predict for XP_069151783.1)
other 7,  chlo 3  (predict for XP_069151784.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101263093
sly-r.6
for
101263093
ath-u.5
for
PUM5
ath-u.5
for
PUM6
gma-u.5
for
100819166
gma-u.5
for
100811036
gma-u.5
for
100780168
vvi-u.5
for
100254662
ppo-u.5
for
18111187
ppo-u.5
for
18100470
ppo-u.5
for
7490841
mtr-u.5
for
11445389
osa-u.5
for
4347460
osa-u.5
for
4346059
zma-u.5
for
103653177
zma-u.5
for
100193145


Ortholog ID: 3693
Species sly sot nta nta ath ath gma gma bra bra vvi ppo ppo mtr ghi ghi bna bna cit cit osa osa zma zma tae tae hvu hvu sbi bdi
Symbol LOC101263093 LOC102602234 LOC107786023 LOC107827427 PUM6 PUM5 LOC100811036 LOC100780168 LOC103863640 LOC103861595 LOC100254662 LOC7490841 LOC18111187 LOC11445389 LOC107887110 LOC107910598 LOC125587979 LOC106346520 LOC102607004 LOC102621102 LOC4347460 LOC4346059 LOC103653177 LOC100193145 LOC123157024 LOC123112488 LOC123399562 LOC123413488 LOC110436972 LOC100831658
Function* pumilio homolog 5 pumilio homolog 5 pumilio homolog 5 pumilio homolog 5 pumilio 6 pumilio 5 pumilio homolog 6, chloroplastic pumilio homolog 6, chloroplastic pumilio homolog 6, chloroplastic pumilio homolog 6, chloroplastic pumilio domain-containing protein PPD1-like pumilio homolog 5 pumilio homolog 6, chloroplastic pumilio homolog 6, chloroplastic pumilio homolog 5 pumilio homolog 5 pumilio homolog 5-like pumilio homolog 6, chloroplastic-like pumilio homolog 5 pumilio homolog 6, chloroplastic pumilio homolog 5 pumilio homolog 5 pumilio homolog 3 uncharacterized LOC100193145 pumilio homolog 5 pumilio homolog 5 pumilio homolog 5-like pumilio homolog 5-like pumilio homolog 5-like pumilio homolog 5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 7
gma04626 Plant-pathogen interaction 5
gma03018 RNA degradation 2
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 2
bna04075 Plant hormone signal transduction 2
bna00061 Fatty acid biosynthesis 2
bna00071 Fatty acid degradation 2
bna01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 7
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 7
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00562 Inositol phosphate metabolism 2
sbi04070 Phosphatidylinositol signaling system 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101263093 102602234 107786023 107827427 828694 821569 100811036 100780168 103863640 103861595 100254662 7490841 18111187 11445389 107887110 107910598 125587979 106346520 102607004 102621102 4347460 4346059 103653177 100193145 123157024 123112488 123399562 123413488 110436972 100831658
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