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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101263904   thylakoidal processing peptidase 1, chloroplastic-like 
 sly-r.6   101263904   thylakoidal processing peptidase 1, chloroplastic-like 
 sot-r.1   102587949   thylakoidal processing peptidase 1, chloroplastic-like 
 nta-r.1   107804945   thylakoidal processing peptidase 1, chloroplastic-like 
 nta-r.1   107822399   thylakoidal processing peptidase 1, chloroplastic 
 ath-u.5   TPP   thylakoid processing peptide 
 ath-u.5   Plsp2A   Peptidase S24/S26A/S26B/S26C family protein 
 gma-u.5   100817525   probable thylakoidal processing peptidase 2, chloroplastic 
 gma-u.5   100802457   thylakoidal processing peptidase 1, chloroplastic 
 bra-r.6   103843490   probable thylakoidal processing peptidase 2, chloroplastic 
 bra-r.6   103844003   probable thylakoidal processing peptidase 2, chloroplastic 
 vvi-u.5   100243802   probable thylakoidal processing peptidase 2, chloroplastic-like 
 ppo-u.5   18104955   uncharacterized LOC18104955 
 mtr-u.5   11431369   thylakoidal processing peptidase 1, chloroplastic 
 mtr-u.5   11417737   probable thylakoidal processing peptidase 2, chloroplastic 
 ghi-r.1   107940692   probable thylakoidal processing peptidase 2, chloroplastic 
 ghi-r.1   107935597   probable thylakoidal processing peptidase 2, chloroplastic 
 ghi-r.1   107940319   probable thylakoidal processing peptidase 2, chloroplastic 
 bna-r.1   106419826   probable thylakoidal processing peptidase 2, chloroplastic 
 bna-r.1   125578637   probable thylakoidal processing peptidase 2, chloroplastic 
 bna-r.1   106348401   thylakoidal processing peptidase 1, chloroplastic 
 cit-r.1   102630129   thylakoidal processing peptidase 1, chloroplastic-like 
 osa-u.5   4347239   thylakoidal processing peptidase 1, chloroplastic 
 zma-u.5   100284377   uncharacterized LOC100284377 
 zma-u.5   100283156   uncharacterized LOC100283156 
 zma-u.5   100502377   uncharacterized LOC100502377 
 tae-r.2   123112170   thylakoidal processing peptidase 1, chloroplastic 
 tae-r.2   123103944   thylakoidal processing peptidase 1, chloroplastic 
 tae-r.2   123122939   probable thylakoidal processing peptidase 2, chloroplastic 
 hvu-r.1   123398564   thylakoidal processing peptidase 1, chloroplastic-like 
 hvu-r.1   123452382   probable thylakoidal processing peptidase 2, chloroplastic 
 sbi-r.1   8062772   thylakoidal processing peptidase 1, chloroplastic 
 sbi-r.1   8083972   probable thylakoidal processing peptidase 2, chloroplastic 
 bdi-r.1   100845632   uncharacterized LOC100845632 

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Top 50 coexpressed genes to 101263904 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101263904 (sly-u.5 coexpression data)

CoexMap"101263904"


slyLOC101263904 | Entrez gene ID : 101263904      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 2 2 2 1 1 2 3 3 1 1 3 3 2 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03060 [list] [network] Protein export (57 genes)
GO BP
GO:0010027 [list] [network] thylakoid membrane organization  (11 genes)  IEA  
GO:0006465 [list] [network] signal peptide processing  (15 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (117 genes)  IEA  
GO:0005886 [list] [network] plasma membrane  (899 genes)  IEA  
GO MF
GO:0004252 [list] [network] serine-type endopeptidase activity  (132 genes)  IEA  
Protein XP_010320362.2 [sequence] [blastp]
XP_010320363.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  vacu 1  (predict for XP_010320362.2)
chlo 9,  vacu 1  (predict for XP_010320363.2)
Subcellular
localization
TargetP
chlo 2  (predict for XP_010320362.2)
chlo 2  (predict for XP_010320363.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101263904
sly-r.6
for
101263904
sot-r.1
for
102587949
nta-r.1
for
107804945
nta-r.1
for
107822399
ath-u.5
for
TPP
ath-u.5
for
Plsp2A
gma-u.5
for
100817525
gma-u.5
for
100802457
bra-r.6
for
103843490
bra-r.6
for
103844003
vvi-u.5
for
100243802
ppo-u.5
for
18104955
mtr-u.5
for
11431369
mtr-u.5
for
11417737
ghi-r.1
for
107940692
ghi-r.1
for
107935597
ghi-r.1
for
107940319
bna-r.1
for
106419826
bna-r.1
for
125578637
bna-r.1
for
106348401
cit-r.1
for
102630129
osa-u.5
for
4347239
zma-u.5
for
100284377
zma-u.5
for
100283156
zma-u.5
for
100502377
tae-r.2
for
123112170
tae-r.2
for
123103944
tae-r.2
for
123122939
hvu-r.1
for
123398564
hvu-r.1
for
123452382
sbi-r.1
for
8062772
sbi-r.1
for
8083972
bdi-r.1
for
100845632


Ortholog ID: 4354
Species sly sot nta nta ath ath gma gma bra bra vvi ppo mtr mtr ghi ghi ghi bna bna bna cit osa zma zma zma tae tae tae hvu hvu sbi sbi bdi
Symbol LOC101263904 LOC102587949 LOC107804945 LOC107822399 TPP Plsp2A LOC100817525 LOC100802457 LOC103843490 LOC103844003 LOC100243802 LOC18104955 LOC11431369 LOC11417737 LOC107940692 LOC107935597 LOC107940319 LOC106419826 LOC125578637 LOC106348401 LOC102630129 LOC4347239 LOC100284377 LOC100283156 LOC100502377 LOC123103944 LOC123121713 LOC123105133 LOC123398564 LOC123452382 LOC8062772 LOC8083972 LOC100845632
Function* thylakoidal processing peptidase 1, chloroplastic-like thylakoidal processing peptidase 1, chloroplastic-like thylakoidal processing peptidase 1, chloroplastic-like thylakoidal processing peptidase 1, chloroplastic thylakoid processing peptide Peptidase S24/S26A/S26B/S26C family protein probable thylakoidal processing peptidase 2, chloroplastic thylakoidal processing peptidase 1, chloroplastic probable thylakoidal processing peptidase 2, chloroplastic probable thylakoidal processing peptidase 2, chloroplastic probable thylakoidal processing peptidase 2, chloroplastic-like uncharacterized LOC18104955 thylakoidal processing peptidase 1, chloroplastic probable thylakoidal processing peptidase 2, chloroplastic probable thylakoidal processing peptidase 2, chloroplastic probable thylakoidal processing peptidase 2, chloroplastic probable thylakoidal processing peptidase 2, chloroplastic probable thylakoidal processing peptidase 2, chloroplastic probable thylakoidal processing peptidase 2, chloroplastic thylakoidal processing peptidase 1, chloroplastic thylakoidal processing peptidase 1, chloroplastic-like thylakoidal processing peptidase 1, chloroplastic uncharacterized LOC100284377 uncharacterized LOC100283156 uncharacterized LOC100502377 thylakoidal processing peptidase 1, chloroplastic thylakoidal processing peptidase 1, chloroplastic probable thylakoidal processing peptidase 2, chloroplastic thylakoidal processing peptidase 1, chloroplastic-like probable thylakoidal processing peptidase 2, chloroplastic thylakoidal processing peptidase 1, chloroplastic probable thylakoidal processing peptidase 2, chloroplastic uncharacterized LOC100845632
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 4
nta04075 Plant hormone signal transduction 4
nta04146 Peroxisome 3
nta04626 Plant-pathogen interaction 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 6
nta04075 Plant hormone signal transduction 4
nta04146 Peroxisome 3
nta04626 Plant-pathogen interaction 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 3
ath00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 4
gma00270 Cysteine and methionine metabolism 3
gma00020 Citrate cycle (TCA cycle) 3
gma03060 Protein export 2
gma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 3
gma03083 Polycomb repressive complex 2
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma01230 Biosynthesis of amino acids 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00592 alpha-Linolenic acid metabolism 4
vvi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 3
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 3
mtr04075 Plant hormone signal transduction 3
mtr04626 Plant-pathogen interaction 3
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 4
bna04626 Plant-pathogen interaction 3
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 5
zma04626 Plant-pathogen interaction 4
zma04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 4
tae00591 Linoleic acid metabolism 3
tae00592 alpha-Linolenic acid metabolism 3
tae03060 Protein export 3
tae00561 Glycerolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00591 Linoleic acid metabolism 3
tae00592 alpha-Linolenic acid metabolism 3
tae04626 Plant-pathogen interaction 3
tae03060 Protein export 3
tae00561 Glycerolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00330 Arginine and proline metabolism 3
tae03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101263904 102587949 107804945 107822399 817595 837198 100817525 100802457 103843490 103844003 100243802 18104955 11431369 11417737 107940692 107935597 107940319 106419826 125578637 106348401 102630129 4347239 100284377 100283156 100502377 123103944 123121713 123105133 123398564 123452382 8062772 8083972 100845632
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