ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	MADS1	MADS-box protein 1
nta-r.1	107797730	agamous-like MADS-box protein MADS2
nta-r.1	107816782	MADS-box protein 04g005320-like
ath-u.5	SEP2	K-box region and MADS-box transcription factor family protein
ath-u.5	SEP3	K-box region and MADS-box transcription factor family protein
ath-u.5	SEP1	K-box region and MADS-box transcription factor family protein
gma-u.5	100786066	agamous-like MADS-box protein MADS2
gma-u.5	100811049	agamous-like MADS-box protein MADS2
gma-u.5	100778931	agamous-like MADS-box protein MADS4
bra-r.6	103846385	developmental protein SEPALLATA 1
bra-r.6	103835412	agamous-like MADS-box protein AGL9 homolog
bra-r.6	103870919	developmental protein SEPALLATA 2
vvi-u.5	100251943	agamous-like MADS-box protein MADS2
vvi-u.5	100232936	agamous-like MADS-box protein MADS2
vvi-u.5	MADS4	MADS-box protein 4
ghi-r.1	107911542	agamous-like MADS-box protein MADS4
ghi-r.1	107918942	MADS-box protein CMB1-like
ghi-r.1	107886377	agamous-like MADS-box protein AGL9 homolog
bna-r.1	111198100	developmental protein SEPALLATA 3
bna-r.1	125580827	developmental protein SEPALLATA 2-like
bna-r.1	106433239	developmental protein SEPALLATA 1
cit-r.1	102618932	agamous-like MADS-box protein AGL9 homolog
cit-r.1	102611482	agamous-like MADS-box protein MADS2
cit-r.1	102620094	agamous-like MADS-box protein MADS2
osa-u.5	4347517	MADS-box transcription factor 8-like
osa-u.5	4346134	MADS-box transcription factor 7-like
zma-u.5	100415938	uncharacterized LOC100415938
zma-u.5	542506	MADS27
tae-r.2	123104312	MADS-box transcription factor 8
tae-r.2	542969	MADS-box transcription factor 8
tae-r.2	780637	MADS-box transcription factor 7
sbi-r.1	8058971	MADS-box transcription factor 8
sbi-r.1	8060611	MADS-box transcription factor 7
bdi-r.1	100844294	MADS-box transcription factor 7-like
bdi-r.1	100843405	MADS-box transcription factor 8

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(133 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2947 genes)

IEA

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(282 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(326 genes)	IEA
GO:0046983 [list] [network] protein dimerization activity	(499 genes)	IEA

Protein

NP_001275579.1 [sequence] [blastp]
XP_069147929.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for NP_001275579.1)
nucl 10	(predict for XP_069147929.1)

Subcellular
localization
TargetP

other 7, mito 5	(predict for NP_001275579.1)
other 7, mito 5	(predict for XP_069147929.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for MADS1	nta-r.1 for 107797730	nta-r.1 for 107816782	ath-u.5 for SEP2	ath-u.5 for SEP3	ath-u.5 for SEP1	gma-u.5 for 100786066	gma-u.5 for 100811049	gma-u.5 for 100778931	bra-r.6 for 103846385	bra-r.6 for 103835412	bra-r.6 for 103870919	vvi-u.5 for 100251943	vvi-u.5 for 100232936	vvi-u.5 for MADS4	ghi-r.1 for 107911542	ghi-r.1 for 107918942	ghi-r.1 for 107886377	bna-r.1 for 111198100	bna-r.1 for 125580827	bna-r.1 for 106433239	cit-r.1 for 102618932	cit-r.1 for 102611482	cit-r.1 for 102620094	osa-u.5 for 4347517	osa-u.5 for 4346134	zma-u.5 for 100415938	zma-u.5 for 542506	tae-r.2 for 123104312	tae-r.2 for 542969	tae-r.2 for 780637	sbi-r.1 for 8058971	sbi-r.1 for 8060611	bdi-r.1 for 100844294	bdi-r.1 for 100843405

Ortholog

Ortholog ID: 747

Species

sly

nta

ath

gma

bra

vvi

ghi

bna

cit

osa

zma

tae

sbi

bdi

Symbol

TM29

LOC107820803

LOC107773468

LOC142181159

SEP2

SEP3

SEP1

MADS28

MADS4

MADS2

Function^*

developmental protein SEPALLATA 1-like

MADS-box protein 04g005320