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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101264841   E3 ubiquitin-protein ligase RMA1H1 
 sly-r.6   101264841   E3 ubiquitin-protein ligase RMA1H1 
 sly-u.5   101254012   E3 ubiquitin-protein ligase RMA3-like 
 sly-u.5   MKB1   RING-finger E3 ubiquitin ligase Makibishi 1 
 sly-u.5   101253976   E3 ubiquitin-protein ligase RMA1H1-like 
 ath-u.5   RMA1   RING membrane-anchor 1 
 ath-u.5   RMA3   RING membrane-anchor 3 
 ath-u.5   RMA2   RING membrane-anchor 2 
 gma-u.5   100786373   E3 ubiquitin-protein ligase RMA1H1-like 
 gma-u.5   100785491   E3 ubiquitin-protein ligase RMA1H1-like 
 gma-u.5   100817526   E3 ubiquitin-protein ligase RMA1-like 
 vvi-u.5   100265502   E3 ubiquitin-protein ligase RMA1H1-like 
 vvi-u.5   100257429   E3 ubiquitin-protein ligase RMA1H1 
 vvi-u.5   100255559   E3 ubiquitin-protein ligase RMA1H1 
 ppo-u.5   18108562   E3 ubiquitin-protein ligase RMA1H1 
 ppo-u.5   7460826   E3 ubiquitin-protein ligase RMA3 
 ppo-u.5   18103016   E3 ubiquitin-protein ligase RMA1H1 
 mtr-u.5   25493170   E3 ubiquitin-protein ligase RMA3 
 mtr-u.5   25493171   E3 ubiquitin-protein ligase RMA1H1 
 mtr-u.5   25487645   E3 ubiquitin-protein ligase RMA1H1 
 osa-u.5   4330106   E3 ubiquitin-protein ligase RMA2 
 osa-u.5   4336483   E3 ubiquitin-protein ligase RMA1H1 
 zma-u.5   103627470   E3 ubiquitin-protein ligase RMA1H1 
 zma-u.5   100192071   uncharacterized LOC100192071 
 zma-u.5   100286356   uncharacterized LOC100286356 

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Top 50 coexpressed genes to 101264841 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101264841 (sly-u.5 coexpression data)

CoexMap"101264841"


slyLOC101264841 | Entrez gene ID : 101264841      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 5 3 3 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04141 [list] [network] Protein processing in endoplasmic reticulum (216 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (283 genes)  IEA  
GO CC
GO:0005783 [list] [network] endoplasmic reticulum  (509 genes)  IEA  
GO MF
GO:0044390 [list] [network] ubiquitin-like protein conjugating enzyme binding  (41 genes)  IEA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (194 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (2359 genes)  IEA  
Protein XP_010323737.3 [sequence] [blastp]
XP_069143183.1 [sequence] [blastp]
XP_069143184.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  golg 1,  mito 1,  extr 1,  vacu 1,  golg_plas 1  (predict for XP_010323737.3)
nucl 6,  golg 1,  mito 1,  extr 1,  vacu 1,  golg_plas 1  (predict for XP_069143183.1)
nucl 6,  golg 1,  mito 1,  extr 1,  vacu 1,  golg_plas 1  (predict for XP_069143184.1)
Subcellular
localization
TargetP
other 9  (predict for XP_010323737.3)
other 9  (predict for XP_069143183.1)
other 9  (predict for XP_069143184.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101264841

.
sly-r.6
for
101264841

.
sly-u.5
for
101254012

.
sly-u.5
for
MKB1

.
sly-u.5
for
101253976

.
ath-u.5
for
RMA1

.
ath-u.5
for
RMA3

.
ath-u.5
for
RMA2

.
gma-u.5
for
100786373

.
gma-u.5
for
100785491

.
gma-u.5
for
100817526

.
vvi-u.5
for
100265502

.
vvi-u.5
for
100257429

.
vvi-u.5
for
100255559

.
ppo-u.5
for
18108562

.
ppo-u.5
for
7460826

.
ppo-u.5
for
18103016

.
mtr-u.5
for
25493170

.
mtr-u.5
for
25493171

.
mtr-u.5
for
25487645

.
osa-u.5
for
4330106

.
osa-u.5
for
4336483

.
zma-u.5
for
103627470

.
zma-u.5
for
100192071

.
zma-u.5
for
100286356

.


Ortholog ID: 734
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol RMA2 RMA1 LOC100779793 LOC100807729 LOC101262152 LOC101253976 LOC4336483 LOC4330106 LOC100192071 LOC100286356 LOC103867947 LOC103867189 LOC100265502 LOC100255559 LOC18104643 LOC18108562 LOC25487645 LOC25487651 LOC123127837 LOC123189813 LOC123405483 LOC123427323 LOC107928842 LOC107925295 LOC106435119 LOC106407488 LOC8074809 LOC8082878 LOC102600465 LOC102579222 LOC102620748 LOC102629340 LOC100835684 LOC106865399 LOC107800076 LOC107787283
Function* RING membrane-anchor 2 RING membrane-anchor 1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA2 uncharacterized LOC100192071 uncharacterized LOC100286356 E3 ubiquitin-protein ligase RMA2 E3 ubiquitin-protein ligase RMA3 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1 E3 ubiquitin-protein ligase RMA2 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA3 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA3-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
gma04141 Protein processing in endoplasmic reticulum 2
gma00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 4
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00908 Zeatin biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00030 Pentose phosphate pathway 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00100 Steroid biosynthesis 5
sot00996 Biosynthesis of various alkaloids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00562 Inositol phosphate metabolism 2
bdi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 5
nta00620 Pyruvate metabolism 5
nta01200 Carbon metabolism 5
nta00020 Citrate cycle (TCA cycle) 4
nta00260 Glycine, serine and threonine metabolism 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828942 825654 100779793 100807729 101262152 101253976 4336483 4330106 100192071 100286356 103867947 103867189 100265502 100255559 18104643 18108562 25487645 25487651 123127837 123189813 123405483 123427323 107928842 107925295 106435119 106407488 8074809 8082878 102600465 102579222 102620748 102629340 100835684 106865399 107800076 107787283
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