ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	101266820	vacuolar sorting protein 3
sly-r.6	101266820	vacuolar sorting protein 3
ath-u.5	AT1G22860	Vacuolar sorting protein 39
gma-u.5	100819895	vacuolar sorting protein 3
gma-u.5	100777041	vacuolar sorting protein 3
vvi-u.5	100251277	vacuolar sorting protein 3
ppo-u.5	18097065	vacuolar sorting protein 3
ppo-u.5	18094463	vacuolar sorting protein 3
mtr-u.5	25500269	vacuolar sorting protein 3
osa-u.5	4337547	vacuolar sorting protein 3
zma-u.5	103629298	uncharacterized LOC103629298

functional annotation

KEGG

sly04148 [list] [network] Efferocytosis (57 genes)

GO BP

GO:0034058 [list] [network] endosomal vesicle fusion	(6 genes)	IEA
GO:0006914 [list] [network] autophagy	(52 genes)	IEA
GO:0006886 [list] [network] intracellular protein transport	(272 genes)	IEA
GO:0016192 [list] [network] vesicle-mediated transport	(469 genes)	IEA

GO CC

GO:0016020 [list] [network] membrane	(3085 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(5127 genes)	IEA

GO MF

GO:0005515 [list] [network] protein binding

(3982 genes)

IEA

Protein

XP_004239204.2 [sequence] [blastp]

Subcellular
localization
wolf

mito 4, chlo 3, mito_plas 3

(predict for XP_004239204.2)

Subcellular
localization
TargetP

chlo 6

(predict for XP_004239204.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101266820	sly-r.6 for 101266820	ath-u.5 for AT1G22860	gma-u.5 for 100819895	gma-u.5 for 100777041	vvi-u.5 for 100251277	ppo-u.5 for 18097065	ppo-u.5 for 18094463	mtr-u.5 for 25500269	osa-u.5 for 4337547	zma-u.5 for 103629298

Ortholog ID: 10470

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

vacuolar sorting protein 3

transforming growth factor-beta receptor-associated protein 1-like

vacuolar sorting protein 3

Vacuolar sorting protein 39

vacuolar sorting protein 3

uncharacterized LOC103629298

vacuolar sorting protein 3

transforming growth factor-beta receptor-associated protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	4
nta00510	N-Glycan biosynthesis	4
nta04141	Protein processing in endoplasmic reticulum	4
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta03082	ATP-dependent chromatin remodeling	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta04148	Efferocytosis	2
nta00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4
gma03040	Spliceosome	3
gma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04148	Efferocytosis	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3
mtr04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00562	Inositol phosphate metabolism	4
bna04070	Phosphatidylinositol signaling system	4
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	7
zma03420	Nucleotide excision repair	3
zma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04148	Efferocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	6
tae03250	Viral life cycle - HIV-1	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

101266820

102605531

107796837

107801254

838891

100777041

100819895

103840821

100251277

18094463

18097065

25500269

107916434

106429786

106400910

102615461

4337547

103629298

123179815

123185130

123427537

8065281

100836335

5717156

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 101266820 (sly-u.5 coexpression data)

Top 50 enrichment test to 101266820 (sly-u.5 coexpression data)


Species	sly	ath	gma	vvi	ppo	mtr	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	2	1	2	1	2	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101266820 (sly-u.5 coexpression data)

Top 50 enrichment test to 101266820 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**