ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101267087	uncharacterized RNA-binding protein C1827.05c
sly-r.6	101267087	uncharacterized RNA-binding protein C1827.05c
sly-u.5	101245260	uncharacterized RNA-binding protein C1827.05c
sot-r.1	102594986	uncharacterized LOC102594986
sot-r.1	102584284	uncharacterized RNA-binding protein C1827.05c-like
nta-r.1	107825723	putative RNA-binding protein C1827.05c
nta-r.1	107801373	putative RNA-binding protein C1827.05c
ath-u.5	AT5G04600	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100814276	RNA recognition motif (RRM) superfamily protein
gma-u.5	100778780	MKI67 FHA domain-interacting nucleolar phosphoprotein
bra-r.6	103850554	uncharacterized RNA-binding protein C1827.05c
bra-r.6	103847273	uncharacterized RNA-binding protein C1827.05c
vvi-u.5	100255455	uncharacterized RNA-binding protein C1827.05c
ppo-u.5	7477188	uncharacterized RNA-binding protein C1827.05c
mtr-u.5	11425441	uncharacterized RNA-binding protein C1827.05c
mtr-u.5	11416225	uncharacterized RNA-binding protein C1827.05c
ghi-r.1	107918541	uncharacterized RNA-binding protein C1827.05c
ghi-r.1	107933250	uncharacterized RNA-binding protein C1827.05c
bna-r.1	BNAC09G50690D	uncharacterized RNA-binding protein C1827.05c
bna-r.1	106425275	uncharacterized RNA-binding protein C1827.05c-like
bna-r.1	106372499	uncharacterized RNA-binding protein C1827.05c-like
cit-r.1	102608776	uncharacterized RNA-binding protein C1827.05c
osa-u.5	4345558	uncharacterized LOC4345558
zma-u.5	100856944	MKI67 FHA domain-interacting nucleolar phosphoprotein-like
tae-r.2	123044299	MKI67 FHA domain-interacting nucleolar phosphoprotein
tae-r.2	123049045	MKI67 FHA domain-interacting nucleolar phosphoprotein
tae-r.2	123131602	MKI67 FHA domain-interacting nucleolar phosphoprotein
hvu-r.1	123402757	MKI67 FHA domain-interacting nucleolar phosphoprotein
hvu-r.1	123425428	MKI67 FHA domain-interacting nucleolar phosphoprotein-like
sbi-r.1	110433349	MKI67 FHA domain-interacting nucleolar phosphoprotein
bdi-r.1	100838203	MKI67 FHA domain-interacting nucleolar phosphoprotein
cre-r.1	CHLRE_08g368500v5	uncharacterized protein

Top 50 coexpressed genes to 101267087 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101267087 (sly-u.5 coexpression data)

CoexMap"101267087"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

(21 genes)

IEA

GO CC

GO:0005730 [list] [network] nucleolus

(194 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding

(1208 genes)

IEA

Protein

XP_004250997.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 4, cyto_nucl 4

(predict for XP_004250997.1)

Subcellular
localization
TargetP

other 5

(predict for XP_004250997.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101267087	sly-r.6 for 101267087	sly-u.5 for 101245260	sot-r.1 for 102594986	sot-r.1 for 102584284	nta-r.1 for 107825723	nta-r.1 for 107801373	ath-u.5 for AT5G04600	gma-u.5 for 100814276	gma-u.5 for 100778780	bra-r.6 for 103850554	bra-r.6 for 103847273	vvi-u.5 for 100255455	ppo-u.5 for 7477188	mtr-u.5 for 11425441	mtr-u.5 for 11416225	ghi-r.1 for 107918541	ghi-r.1 for 107933250	bna-r.1 for BNAC09G50690D	bna-r.1 for 106425275	bna-r.1 for 106372499	cit-r.1 for 102608776	osa-u.5 for 4345558	zma-u.5 for 100856944	tae-r.2 for 123044299	tae-r.2 for 123049045	tae-r.2 for 123131602	hvu-r.1 for 123402757	hvu-r.1 for 123425428	sbi-r.1 for 110433349	bdi-r.1 for 100838203	cre-r.1 for CHLRE_08g368500v5

Ortholog

Ortholog ID: 6066

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized RNA-binding protein C1827.05c

uncharacterized LOC102594986

uncharacterized RNA-binding protein C1827.05c-like

putative RNA-binding protein C1827.05c

RNA-binding (RRM/RBD/RNP motifs) family protein

RNA recognition motif (RRM) superfamily protein

MKI67 FHA domain-interacting nucleolar phosphoprotein

uncharacterized RNA-binding protein C1827.05c

uncharacterized RNA-binding protein C1827.05c-like

uncharacterized RNA-binding protein C1827.05c

uncharacterized LOC4345558

MKI67 FHA domain-interacting nucleolar phosphoprotein-like

MKI67 FHA domain-interacting nucleolar phosphoprotein

MKI67 FHA domain-interacting nucleolar phosphoprotein-like

MKI67 FHA domain-interacting nucleolar phosphoprotein

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly03010	Ribosome	3
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	8
sot03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	3
nta04120	Ubiquitin mediated proteolysis	3
nta03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	4
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	3
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3
bra03008	Ribosome biogenesis in eukaryotes	2
bra00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	7
vvi03040	Spliceosome	2
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	7
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	2
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	2
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00240	Pyrimidine metabolism	2
ghi00250	Alanine, aspartate and glutamate metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	6
bna03082	ATP-dependent chromatin remodeling	2
bna03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	4
bna03082	ATP-dependent chromatin remodeling	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	6
bna03010	Ribosome	4
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	3
osa03008	Ribosome biogenesis in eukaryotes	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	2
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	5

Expression

Expression pattern

Entrez Gene ID^*

101267087

101245260

102594986

102584284

107825723

107801373

830337

100814276

100778780

103850554

103847273

100255455

7477188

11425441

11416225

107918541

107933250

106433121

106425275

106372499

102608776

4345558

100856944

123049045

123142957

123188037

123402757

123425428

110433349

100838203

5721707

The preparation time of this page was 1.1 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	2	1	2	2	1	1	2	2	3	1	1	1	3	2	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101267087 (sly-u.5 coexpression data)

Top 50 enrichment test to 101267087 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**