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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101267620   protein TRANSPARENT TESTA 9 
 sly-r.6   101267620   protein TRANSPARENT TESTA 9 
 sot-r.1   102605720   uncharacterized LOC102605720 
 nta-r.1   107799774   protein TRANSPARENT TESTA 9 
 nta-r.1   107760996   protein TRANSPARENT TESTA 9 
 ath-u.5   AT3G28430   CLEC16A-like protein 
 gma-u.5   100789779   protein TRANSPARENT TESTA 9 
 gma-u.5   100786267   protein TRANSPARENT TESTA 9 
 bra-r.6   103829489   protein TRANSPARENT TESTA 9 
 bra-r.6   103828329   protein TRANSPARENT TESTA 9 
 vvi-u.5   100253058   protein TRANSPARENT TESTA 9 
 ppo-u.5   7474720   protein TRANSPARENT TESTA 9 
 ppo-u.5   7490489   protein TRANSPARENT TESTA 9 
 mtr-u.5   11445545   protein TRANSPARENT TESTA 9 
 mtr-u.5   11445431   protein TRANSPARENT TESTA 9 
 ghi-r.1   121225267   protein TRANSPARENT TESTA 9 
 ghi-r.1   107937193   protein TRANSPARENT TESTA 9 
 bna-r.1   106401248   protein TRANSPARENT TESTA 9 
 bna-r.1   106357617   protein TRANSPARENT TESTA 9 
 bna-r.1   106355267   protein TRANSPARENT TESTA 9 
 cit-r.1   102610159   protein TRANSPARENT TESTA 9 
 osa-u.5   4335414   protein TRANSPARENT TESTA 9 
 zma-u.5   100383777   uncharacterized LOC100383777 
 tae-r.2   123053027   protein TRANSPARENT TESTA 9 
 tae-r.2   123045193   protein TRANSPARENT TESTA 9 
 tae-r.2   123188935   protein TRANSPARENT TESTA 9 
 hvu-r.1   123426416   protein TRANSPARENT TESTA 9 
 sbi-r.1   8079737   uncharacterized LOC8079737 
 sbi-r.1   8085777   uncharacterized LOC8085777 
 bdi-r.1   100843426   protein TRANSPARENT TESTA 9 
 cre-r.1   CHLRE_12g515250v5   uncharacterized protein 

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Top 50 coexpressed genes to 101267620 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101267620 (sly-u.5 coexpression data)

CoexMap"101267620"


slyLOC101267620 | Entrez gene ID : 101267620    
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 2 2 1 2 2 2 3 1 1 1 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901096 [list] [network] regulation of autophagosome maturation  (1 genes)  IEA  
GO:0008333 [list] [network] endosome to lysosome transport  (5 genes)  IEA  
GO:0016197 [list] [network] endosomal transport  (67 genes)  IEA  
GO CC
GO:0036020 [list] [network] endolysosome membrane  (1 genes)  IEA  
GO:0005770 [list] [network] late endosome  (35 genes)  IEA  
GO MF
Protein XP_004242920.1 [sequence] [blastp]
XP_010323402.1 [sequence] [blastp]
XP_010323403.1 [sequence] [blastp]
XP_069142842.1 [sequence] [blastp]
XP_069142843.1 [sequence] [blastp]
XP_069142844.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 7,  E.R. 1,  nucl 1,  pero 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_004242920.1)
plas 7,  E.R. 1,  nucl 1,  pero 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_010323402.1)
plas 8,  chlo 1,  mito 1,  E.R. 1,  chlo_mito 1  (predict for XP_010323403.1)
plas 6,  E.R. 2,  nucl 1,  pero 1  (predict for XP_069142842.1)
plas 7,  E.R. 2  (predict for XP_069142843.1)
plas 8,  chlo 1,  mito 1,  E.R. 1,  chlo_mito 1  (predict for XP_069142844.1)
Subcellular
localization
TargetP
mito 7,  other 7  (predict for XP_004242920.1)
mito 7,  other 7  (predict for XP_010323402.1)
mito 8  (predict for XP_010323403.1)
mito 7,  other 7  (predict for XP_069142842.1)
mito 7,  other 7  (predict for XP_069142843.1)
mito 8  (predict for XP_069142844.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101267620
sly-r.6
for
101267620
sot-r.1
for
102605720
nta-r.1
for
107799774
nta-r.1
for
107760996
ath-u.5
for
AT3G28430
gma-u.5
for
100789779
gma-u.5
for
100786267
bra-r.6
for
103829489
bra-r.6
for
103828329
vvi-u.5
for
100253058
ppo-u.5
for
7474720
ppo-u.5
for
7490489
mtr-u.5
for
11445545
mtr-u.5
for
11445431
ghi-r.1
for
121225267
ghi-r.1
for
107937193
bna-r.1
for
106401248
bna-r.1
for
106357617
bna-r.1
for
106355267
cit-r.1
for
102610159
osa-u.5
for
4335414
zma-u.5
for
100383777
tae-r.2
for
123053027
tae-r.2
for
123045193
tae-r.2
for
123188935
hvu-r.1
for
123426416
sbi-r.1
for
8079737
sbi-r.1
for
8085777
bdi-r.1
for
100843426
cre-r.1
for
CHLRE_12g515250v5


Ortholog ID: 7236
Species sly sot nta nta ath gma gma bra bra vvi ppo ppo mtr mtr ghi ghi bna bna bna cit osa zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC101267620 LOC102605720 LOC107799774 LOC107760996 AT3G28430 LOC100789779 LOC100786267 LOC103829489 LOC103828329 LOC100253058 LOC7474720 LOC7490489 LOC11445545 LOC11445431 LOC121225267 LOC107937193 LOC106357617 LOC106355267 LOC125576656 LOC102610159 LOC4335414 LOC100383777 LOC123053027 LOC123045193 LOC123188935 LOC123426416 LOC8079737 LOC8085777 LOC100843426 CHLRE_12g515250v5
Function* protein TRANSPARENT TESTA 9 uncharacterized LOC102605720 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 CLEC16A-like protein protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9-like protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 uncharacterized LOC100383777 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 uncharacterized LOC8079737 uncharacterized LOC8085777 protein TRANSPARENT TESTA 9 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma03250 Viral life cycle - HIV-1 2
gma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma00564 Glycerophospholipid metabolism 2
gma00565 Ether lipid metabolism 2
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
bra04382 Cornified envelope formation 2
bra04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 4
bra04382 Cornified envelope formation 4
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 8
ghi04382 Cornified envelope formation 8
ghi03013 Nucleocytoplasmic transport 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 3
ghi04382 Cornified envelope formation 2
ghi03013 Nucleocytoplasmic transport 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101267620 102605720 107799774 107760996 822473 100789779 100786267 103829489 103828329 100253058 7474720 7490489 11445545 11445431 121225267 107937193 106357617 106355267 125576656 102610159 4335414 100383777 123053027 123045193 123188935 123426416 8079737 8085777 100843426 66055558
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