ATTED-II : GeneCoexpression result

Species	Gene	Description
sot-r.1	102597436	mediator of RNA polymerase II transcription subunit 20a-like
nta-r.1	107829627	mediator of RNA polymerase II transcription subunit 20a-like
nta-r.1	107791239	mediator of RNA polymerase II transcription subunit 20a-like
nta-r.1	107777337	mediator of RNA polymerase II transcription subunit 20a-like
ath-u.5	AT2G28230	TATA-binding related factor (TRF) of subunit 20 of Mediator complex
gma-u.5	100814806	uncharacterized LOC100814806
gma-u.5	100794645	mediator of RNA polymerase II transcription subunit 20a
bra-r.6	103829718	mediator of RNA polymerase II transcription subunit 20a
vvi-u.5	100247363	mediator of RNA polymerase II transcription subunit 20a
ppo-u.5	18100353	mediator of RNA polymerase II transcription subunit 20a
mtr-u.5	25494183	mediator of RNA polymerase II transcription subunit 20a
mtr-u.5	25486902	mediator of RNA polymerase II transcription subunit 20a
ghi-r.1	107931991	mediator of RNA polymerase II transcription subunit 20a
ghi-r.1	107893356	mediator of RNA polymerase II transcription subunit 20a
bna-r.1	125594762	mediator of RNA polymerase II transcription subunit 20a
bna-r.1	106352570	mediator of RNA polymerase II transcription subunit 20a
bna-r.1	106396345	mediator of RNA polymerase II transcription subunit 20a
cit-r.1	102627852	mediator of RNA polymerase II transcription subunit 20a
osa-u.5	4347187	mediator of RNA polymerase II transcription subunit 20a
zma-u.5	100276988	uncharacterized LOC100276988
tae-r.2	123121498	mediator of RNA polymerase II transcription subunit 20a
tae-r.2	123103723	mediator of RNA polymerase II transcription subunit 20a
hvu-r.1	123397543	mediator of RNA polymerase II transcription subunit 20a-like
sbi-r.1	110432278	mediator of RNA polymerase II transcription subunit 20a-like
bdi-r.1	100834966	mediator of RNA polymerase II transcription subunit 20a
cre-r.1	CHLRE_11g476900v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(493 genes)

IEA

GO CC

GO:0016592 [list] [network] mediator complex

(47 genes)

IEA

GO MF

GO:0003713 [list] [network] transcription coactivator activity

(45 genes)

IEA

Protein

XP_025883450.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 2, extr 2, vacu 1, golg 1, nucl 1, cyto 1, plas 1, E.R. 1, cyto_nucl 1, nucl_plas 1, E.R._plas 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_025883450.1)

Subcellular
localization
TargetP

other 7, scret 4

(predict for XP_025883450.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102597436	nta-r.1 for 107829627	nta-r.1 for 107791239	nta-r.1 for 107777337	ath-u.5 for AT2G28230	gma-u.5 for 100814806	gma-u.5 for 100794645	bra-r.6 for 103829718	vvi-u.5 for 100247363	ppo-u.5 for 18100353	mtr-u.5 for 25494183	mtr-u.5 for 25486902	ghi-r.1 for 107931991	ghi-r.1 for 107893356	bna-r.1 for 125594762	bna-r.1 for 106352570	bna-r.1 for 106396345	cit-r.1 for 102627852	osa-u.5 for 4347187	zma-u.5 for 100276988	tae-r.2 for 123121498	tae-r.2 for 123103723	hvu-r.1 for 123397543	sbi-r.1 for 110432278	bdi-r.1 for 100834966	cre-r.1 for CHLRE_11g476900v5

Ortholog

Ortholog ID: 4198

Species

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

mediator of RNA polymerase II transcription subunit 20a-like

TATA-binding related factor (TRF) of subunit 20 of Mediator complex

uncharacterized LOC100814806

mediator of RNA polymerase II transcription subunit 20a

uncharacterized LOC100276988

mediator of RNA polymerase II transcription subunit 20a

mediator of RNA polymerase II transcription subunit 20a-like

mediator of RNA polymerase II transcription subunit 20a

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2
nta03420	Nucleotide excision repair	2
nta04141	Protein processing in endoplasmic reticulum	2
nta00510	N-Glycan biosynthesis	2
nta00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	4
vvi04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	5
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	4
ghi04130	SNARE interactions in vesicular transport	2
ghi03040	Spliceosome	2
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	4
ghi03010	Ribosome	4
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3
tae04075	Plant hormone signal transduction	2
tae00520	Amino sugar and nucleotide sugar metabolism	2
tae01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	2
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	3

Expression

Expression pattern

Entrez Gene ID^*

102597436

107829627

107791239

107777337

817369

100814806

100794645

103829718

100247363

18100353

25494183

25486902

107931991

107893356

125594762

106352570

106396345

102627852

4347187

100276988

123121498

123111941

123397543

110432278

100834966

5722857

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 102597436 (sot-r.1 coexpression data)

Top 50 enrichment test to 102597436 (sot-r.1 coexpression data)


Species	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre	sly
Paralog	1	3	1	2	1	1	1	2	2	3	1	1	1	2	1	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102597436 (sot-r.1 coexpression data)

Top 50 enrichment test to 102597436 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**