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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101268375   glycine--tRNA ligase, mitochondrial 1 
 sly-r.6   101268375   glycine--tRNA ligase, mitochondrial 1 
 sly-u.5   101257430   glycine--tRNA ligase, mitochondrial 1-like 
 sot-r.1   102591638   glycine--tRNA ligase, mitochondrial 1-like 
 sot-r.1   102606369   glycine--tRNA ligase, mitochondrial 1-like 
 nta-r.1   107798994   glycine--tRNA ligase, mitochondrial 1 
 nta-r.1   107764895   glycine--tRNA ligase, mitochondrial 1-like 
 nta-r.1   107822727   glycine--tRNA ligase, mitochondrial 1 
 ath-u.5   AT1G29880   glycyl-tRNA synthetase / glycine-tRNA ligase 
 gma-u.5   100810476   glycine--tRNA ligase, mitochondrial 1 
 bra-r.6   103840454   glycine--tRNA ligase, mitochondrial 1 
 bra-r.6   103828921   glycine--tRNA ligase, mitochondrial 1 
 vvi-u.5   100257704   glycine--tRNA ligase, mitochondrial 1 
 vvi-u.5   100262502   glycine--tRNA ligase, mitochondrial 1 
 ppo-u.5   7496527   glycine--tRNA ligase, mitochondrial 1 
 ppo-u.5   7491435   glycine--tRNA ligase, mitochondrial 1 
 mtr-u.5   25499807   glycine--tRNA ligase, mitochondrial 1 
 mtr-u.5   25488481   glycine--tRNA ligase, mitochondrial 1 
 mtr-u.5   25488482   glycine--tRNA ligase, mitochondrial 1 
 ghi-r.1   121228203   glycine--tRNA ligase, mitochondrial 1 
 ghi-r.1   107898984   glycine--tRNA ligase, mitochondrial 1 
 bna-r.1   111206420   glycine--tRNA ligase, mitochondrial 1-like 
 bna-r.1   106367376   glycine--tRNA ligase, mitochondrial 1 
 bna-r.1   106357830   glycine--tRNA ligase, mitochondrial 1-like 
 cit-r.1   102621048   glycine--tRNA ligase, mitochondrial 1-like 
 osa-u.5   4335708   glycine--tRNA ligase, mitochondrial 1 
 osa-u.5   4346171   glycine--tRNA ligase, mitochondrial 1 
 zma-u.5   103643028   glycine--tRNA ligase, mitochondrial 1 
 zma-u.5   100383520   Glycine--tRNA ligase mitochondrial 1 
 zma-u.5   113687172   glycine--tRNA ligase, mitochondrial 
 tae-r.2   123152033   glycine--tRNA ligase, mitochondrial 1 
 tae-r.2   123189099   glycine--tRNA ligase, mitochondrial 1 
 tae-r.2   123156086   glycine--tRNA ligase, mitochondrial 1 
 hvu-r.1   123426589   glycine--tRNA ligase, mitochondrial 1-like 
 hvu-r.1   123413574   glycine--tRNA ligase, mitochondrial 1-like 
 sbi-r.1   8072037   glycine--tRNA ligase, mitochondrial 1 
 sbi-r.1   8060590   glycine--tRNA ligase, mitochondrial 1 
 bdi-r.1   100824721   glycine--tRNA ligase, mitochondrial 1 
 cre-r.1   CHLRE_05g233800v5   uncharacterized protein 

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Top 50 coexpressed genes to 101268375 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101268375 (sly-u.5 coexpression data)

CoexMap"101268375"


slyLOC101268375 | Entrez gene ID : 101268375    
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 2 3 1 1 2 2 2 3 2 3 1 2 3 3 2 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00970 [list] [network] Aminoacyl-tRNA biosynthesis (114 genes)
GO BP
GO:0070150 [list] [network] mitochondrial glycyl-tRNA aminoacylation  (2 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (608 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0004820 [list] [network] glycine-tRNA ligase activity  (3 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein XP_004235848.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 3,  cyto_pero 3  (predict for XP_004235848.2)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for XP_004235848.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101268375
sly-r.6
for
101268375
sly-u.5
for
101257430
sot-r.1
for
102591638
sot-r.1
for
102606369
nta-r.1
for
107798994
nta-r.1
for
107764895
nta-r.1
for
107822727
ath-u.5
for
AT1G29880
gma-u.5
for
100810476
bra-r.6
for
103840454
bra-r.6
for
103828921
vvi-u.5
for
100257704
vvi-u.5
for
100262502
ppo-u.5
for
7496527
ppo-u.5
for
7491435
mtr-u.5
for
25499807
mtr-u.5
for
25488481
mtr-u.5
for
25488482
ghi-r.1
for
121228203
ghi-r.1
for
107898984
bna-r.1
for
111206420
bna-r.1
for
106367376
bna-r.1
for
106357830
cit-r.1
for
102621048
osa-u.5
for
4335708
osa-u.5
for
4346171
zma-u.5
for
103643028
zma-u.5
for
100383520
zma-u.5
for
113687172
tae-r.2
for
123152033
tae-r.2
for
123189099
tae-r.2
for
123156086
hvu-r.1
for
123426589
hvu-r.1
for
123413574
sbi-r.1
for
8072037
sbi-r.1
for
8060590
bdi-r.1
for
100824721
cre-r.1
for
CHLRE_05g233800v5


Ortholog ID: 4468
Species sly sly sot sot nta nta nta ath gma bra bra vvi vvi ppo ppo mtr mtr mtr ghi ghi bna bna bna cit osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi cre
Symbol LOC101268375 LOC101257430 LOC102591638 LOC102606369 LOC107764895 LOC107822727 LOC107777878 AT1G29880 LOC100810476 LOC103840454 LOC103828921 LOC100257704 LOC100262502 LOC7496527 LOC7491435 LOC25499807 LOC25488481 LOC25488482 LOC121228203 LOC107898984 LOC111206420 LOC106357830 LOC106421819 LOC102621048 LOC4335708 LOC4346171 LOC103643028 LOC100383520 LOC113687172 LOC123189099 LOC123156086 LOC123170395 LOC123426589 LOC123413574 LOC8072037 LOC8060590 LOC100824721 CHLRE_05g233800v5
Function* glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycyl-tRNA synthetase / glycine-tRNA ligase glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 Glycine--tRNA ligase mitochondrial 1 glycine--tRNA ligase, mitochondrial glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1-like glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 glycine--tRNA ligase, mitochondrial 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 5
sly03010 Ribosome 4
sly01230 Biosynthesis of amino acids 3
sly00261 Monobactam biosynthesis 2
sly00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot00970 Aminoacyl-tRNA biosynthesis 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
sot03008 Ribosome biogenesis in eukaryotes 2
sot00190 Oxidative phosphorylation 2
sot04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
nta00970 Aminoacyl-tRNA biosynthesis 2
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
nta00970 Aminoacyl-tRNA biosynthesis 2
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00260 Glycine, serine and threonine metabolism 2
nta00261 Monobactam biosynthesis 2
nta00270 Cysteine and methionine metabolism 2
nta00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 8
ath00970 Aminoacyl-tRNA biosynthesis 7
ath00300 Lysine biosynthesis 5
ath00470 D-Amino acid metabolism 3
ath01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 4
gma00250 Alanine, aspartate and glutamate metabolism 3
gma00230 Purine metabolism 2
gma01232 Nucleotide metabolism 2
gma00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
bra01240 Biosynthesis of cofactors 2
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 6
bra01240 Biosynthesis of cofactors 3
bra00230 Purine metabolism 2
bra04626 Plant-pathogen interaction 2
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 3
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 6
ppo03008 Ribosome biogenesis in eukaryotes 4
ppo01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 7
ppo01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 5
mtr00230 Purine metabolism 2
mtr00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 5
mtr00230 Purine metabolism 2
mtr00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 5
mtr00230 Purine metabolism 2
mtr00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 7
ghi00970 Aminoacyl-tRNA biosynthesis 6
ghi00300 Lysine biosynthesis 5
ghi00470 D-Amino acid metabolism 3
ghi00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 7
ghi00300 Lysine biosynthesis 5
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi00261 Monobactam biosynthesis 3
ghi00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
cit03040 Spliceosome 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 4
osa01230 Biosynthesis of amino acids 3
osa01040 Biosynthesis of unsaturated fatty acids 2
osa01212 Fatty acid metabolism 2
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 6
osa03008 Ribosome biogenesis in eukaryotes 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 7
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae00030 Pentose phosphate pathway 3
tae00480 Glutathione metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00230 Purine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 9
bdi03013 Nucleocytoplasmic transport 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 8
cre00260 Glycine, serine and threonine metabolism 3
cre00270 Cysteine and methionine metabolism 3
cre01230 Biosynthesis of amino acids 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101268375 101257430 102591638 102606369 107764895 107822727 107777878 839866 100810476 103840454 103828921 100257704 100262502 7496527 7491435 25499807 25488481 25488482 121228203 107898984 111206420 106357830 106421819 102621048 4335708 4346171 103643028 100383520 113687172 123189099 123156086 123170395 123426589 123413574 8072037 8060590 100824721 5727750
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