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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101268737   probable CCR4-associated factor 1 homolog 11 
 sly-r.6   101268737   probable CCR4-associated factor 1 homolog 11 
 sly-u.5   101258270   probable CCR4-associated factor 1 homolog 9 
 ath-u.5   CAF1a   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 ath-u.5   CAF1b   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 gma-u.5   100817875   CCR4 associated factor 1-related protein 
 gma-u.5   100811298   probable CCR4-associated factor 1 homolog 11 
 gma-u.5   100805583   probable CCR4-associated factor 1 homolog 11 
 vvi-u.5   100253485   probable CCR4-associated factor 1 homolog 9 
 vvi-u.5   100249306   probable CCR4-associated factor 1 homolog 9 
 ppo-u.5   18102215   probable CCR4-associated factor 1 homolog 9 
 ppo-u.5   7485296   probable CCR4-associated factor 1 homolog 11 
 ppo-u.5   18098097   probable CCR4-associated factor 1 homolog 11 
 mtr-u.5   112416242   probable CCR4-associated factor 1 homolog 11 
 mtr-u.5   112417479   probable CCR4-associated factor 1 homolog 9 
 mtr-u.5   112417480   probable CCR4-associated factor 1 homolog 11 
 osa-u.5   4337457   probable CCR4-associated factor 1 homolog 11 
 zma-u.5   100193751   uncharacterized LOC100193751 
 zma-u.5   103642973   probable CCR4-associated factor 1 homolog 11 

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Top 50 coexpressed genes to 101268737 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101268737 (sly-u.5 coexpression data)

CoexMap"101268737"


slyLOC101268737 | Entrez gene ID : 101268737      
Species sly ath gma vvi ppo mtr osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 3 2 3 2 3 3 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03018 [list] [network] RNA degradation (116 genes)
GO BP
GO CC
GO:0030015 [list] [network] CCR4-NOT core complex  (25 genes)  IEA  
GO:0030014 [list] [network] CCR4-NOT complex  (35 genes)  IEA  
GO:0000932 [list] [network] P-body  (50 genes)  IEA  
GO MF
GO:0004535 [list] [network] poly(A)-specific ribonuclease activity  (11 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4457 genes)  IEA  
Protein XP_004251085.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  mito 1,  E.R. 1,  pero 1,  cysk 1,  cysk_nucl 1  (predict for XP_004251085.1)
Subcellular
localization
TargetP
other 8  (predict for XP_004251085.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101268737

.
sly-r.6
for
101268737

.
sly-u.5
for
101258270

.
ath-u.5
for
CAF1a

.
ath-u.5
for
CAF1b

.
gma-u.5
for
100817875

.
gma-u.5
for
100811298

.
gma-u.5
for
100805583

.
vvi-u.5
for
100253485

.
vvi-u.5
for
100249306

.
ppo-u.5
for
18102215

.
ppo-u.5
for
7485296

.
ppo-u.5
for
18098097

.
mtr-u.5
for
112416242

.
mtr-u.5
for
112417479

.
mtr-u.5
for
112417480

.
osa-u.5
for
4337457

.
zma-u.5
for
100193751

.
zma-u.5
for
103642973

.


Ortholog ID: 2912
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot sot cit cit bdi nta nta
Symbol CAF1b CAF1a LOC100790027 LOC100811298 LOC101268737 LOC101258270 LOC4337457 LOC103642973 LOC100193751 LOC103856505 LOC103848067 LOC100253485 LOC100249306 LOC7485296 LOC7469961 LOC112419659 LOC112419688 LOC123047493 LOC123191113 LOC123431274 LOC107889193 LOC107951705 LOC106386952 LOC106371662 LOC8076496 LOC102594631 LOC102578270 LOC102630158 LOC102614741 LOC100821768 LOC107760653 LOC107815219
Function* Polynucleotidyl transferase, ribonuclease H-like superfamily protein Polynucleotidyl transferase, ribonuclease H-like superfamily protein probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 uncharacterized LOC100193751 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 9 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 probable CCR4-associated factor 1 homolog 11 putative CCR4-associated factor 1 homolog 11 putative CCR4-associated factor 1 homolog 9
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 4
gma00230 Purine metabolism 3
gma00030 Pentose phosphate pathway 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
sly04075 Plant hormone signal transduction 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 4
zma04626 Plant-pathogen interaction 4
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 3
ghi04141 Protein processing in endoplasmic reticulum 3
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832285 823551 100790027 100811298 101268737 101258270 4337457 103642973 100193751 103856505 103848067 100253485 100249306 7485296 7469961 112419659 112419688 123047493 123191113 123431274 107889193 107951705 106386952 106371662 8076496 102594631 102578270 102630158 102614741 100821768 107760653 107815219
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