ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102580712	calmodulin-interacting protein 111
sot-r.1	102600114	cell division cycle protein 48 homolog
sot-r.1	102597683	cell division cycle protein 48 homolog
sot-r.1	102588443	cell division control protein 48 homolog C-like
sly-u.5	101245092	cell division control protein 48 homolog C
sly-u.5	101259229	cell division cycle protein 48 homolog
sly-u.5	101266255	cell division cycle protein 48 homolog
nta-r.1	107791620	cell division cycle protein 48 homolog
nta-r.1	107830438	cell division control protein 48 homolog C
nta-r.1	107789262	cell division cycle protein 48 homolog
ath-u.5	AtCDC48C	ATPase, AAA-type, CDC48 protein
ath-u.5	CIP111	Cam interacting protein 111
ath-u.5	AtCDC48B	ATPase, AAA-type, CDC48 protein
gma-u.5	100799580	cell division cycle protein 48 homolog
gma-u.5	100814141	cell division cycle protein 48 homolog
gma-u.5	100806067	cell division cycle protein 48 homolog
bra-r.6	103842285	cell division control protein 48 homolog D
bra-r.6	103855479	cell division control protein 48 homolog E
vvi-u.5	100265402	cell division cycle protein 48 homolog
vvi-u.5	100261441	cell division control protein 48 homolog C
vvi-u.5	100258668	cell division cycle protein 48 homolog
ppo-u.5	7467628	cell division cycle protein 48 homolog
ppo-u.5	18100167	cell division cycle protein 48 homolog
mtr-u.5	11432951	cell division control protein 48 homolog D
mtr-u.5	11422689	calmodulin-interacting protein 111
mtr-u.5	11421160	cell division control protein 48 homolog C
ghi-r.1	107944187	cell division cycle protein 48 homolog
ghi-r.1	107933568	calmodulin-interacting protein 111
ghi-r.1	107931226	cell division cycle protein 48 homolog
bna-r.1	106387534	cell division control protein 48 homolog C
bna-r.1	106388676	cell division control protein 48 homolog C-like
bna-r.1	106388968	cell division control protein 48 homolog A
cit-r.1	102612408	cell division cycle protein 48 homolog
cit-r.1	102623699	cell division control protein 48 homolog C
osa-u.5	4348731	cell division control protein 48 homolog E
osa-u.5	4331645	cell division cycle protein 48 homolog
osa-u.5	4339880	cell division control protein 48 homolog C
zma-u.5	100502003	uncharacterized LOC100502003
zma-u.5	pco097024a	Cell division control protein 48 homolog D
zma-u.5	100278319	uncharacterized LOC100278319
tae-r.2	123181970	cell division control protein 48 homolog E-like
tae-r.2	123189622	calmodulin-interacting protein 111
hvu-r.1	123399786	cell division control protein 48 homolog E-like
hvu-r.1	123399795	cell division control protein 48 homolog E-like
sbi-r.1	8067906	cell division control protein 48 homolog C
sbi-r.1	8073902	cell division control protein 48 homolog E
sbi-r.1	8085467	cell division cycle protein 48 homolog
bdi-r.1	100843494	cell division control protein 48 homolog C
bdi-r.1	100834048	calmodulin-interacting protein 111
cre-r.1	CHLRE_09g401182v5	uncharacterized protein
cre-r.1	CHLRE_06g269950v5	uncharacterized protein
cre-r.1	CHLRE_09g398550v5	uncharacterized protein

Top 50 coexpressed genes to 102580712 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102580712 (sot-r.1 coexpression data)

CoexMap"102580712"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast	(606 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(4349 genes)	IEA

GO MF

GO:0016887 [list] [network] ATP hydrolysis activity	(431 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2117 genes)	IEA

Protein

XP_006364783.1 [sequence] [blastp]
XP_006364784.1 [sequence] [blastp]
XP_006364785.1 [sequence] [blastp]
XP_006364787.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, mito 2, nucl_plas 2, cyto 1, chlo_mito 1, mito_plas 1	(predict for XP_006364783.1)
nucl 4, mito 2, nucl_plas 2, cyto 1, chlo_mito 1, mito_plas 1	(predict for XP_006364784.1)
nucl 4, mito 3, cyto_nucl 3	(predict for XP_006364785.1)
chlo 4, cyto 1, mito 1, vacu 1, nucl 1, plas 1, extr 1, cyto_mito 1, nucl_plas 1, E.R._vacu 1, cyto_pero 1, cyto_E.R. 1	(predict for XP_006364787.2)

Subcellular
localization
TargetP

chlo 5	(predict for XP_006364783.1)
chlo 5	(predict for XP_006364784.1)
chlo 5	(predict for XP_006364785.1)
mito 4	(predict for XP_006364787.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102580712	sot-r.1 for 102600114	sot-r.1 for 102597683	sot-r.1 for 102588443	sly-u.5 for 101245092	sly-u.5 for 101259229	sly-u.5 for 101266255	nta-r.1 for 107791620	nta-r.1 for 107830438	nta-r.1 for 107789262	ath-u.5 for AtCDC48C	ath-u.5 for CIP111	ath-u.5 for AtCDC48B	gma-u.5 for 100799580	gma-u.5 for 100814141	gma-u.5 for 100806067	bra-r.6 for 103842285	bra-r.6 for 103855479	vvi-u.5 for 100265402	vvi-u.5 for 100261441	vvi-u.5 for 100258668	ppo-u.5 for 7467628	ppo-u.5 for 18100167	mtr-u.5 for 11432951	mtr-u.5 for 11422689	mtr-u.5 for 11421160	ghi-r.1 for 107944187	ghi-r.1 for 107933568	ghi-r.1 for 107931226	bna-r.1 for 106387534	bna-r.1 for 106388676	bna-r.1 for 106388968	cit-r.1 for 102612408	cit-r.1 for 102623699	osa-u.5 for 4348731	osa-u.5 for 4331645	osa-u.5 for 4339880	zma-u.5 for 100502003	zma-u.5 for pco097024a	zma-u.5 for 100278319	tae-r.2 for 123181970	tae-r.2 for 123189622	hvu-r.1 for 123399786	hvu-r.1 for 123399795	sbi-r.1 for 8067906	sbi-r.1 for 8073902	sbi-r.1 for 8085467	bdi-r.1 for 100843494	bdi-r.1 for 100834048	cre-r.1 for CHLRE_09g401182v5	cre-r.1 for CHLRE_06g269950v5	cre-r.1 for CHLRE_09g398550v5

Ortholog

Ortholog ID: 216

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

sbi

bdi

cre

Symbol

CIP111

CDC48C

CDC48

Function^*