ATTED-II : GeneCoexpression result

Species	Gene	Description
sot-r.1	102581917	uncharacterized LOC102581917
sly-u.5	101245498	uncharacterized LOC101245498
nta-r.1	107781058	uncharacterized LOC107781058
nta-r.1	107821231	uncharacterized LOC107821231
ath-u.5	TPR4	Tetratricopeptide repeat (TPR)-like superfamily protein
gma-u.5	100783167	uncharacterized LOC100783167
gma-u.5	100805375	uncharacterized LOC100805375
bra-r.6	103844246	uncharacterized LOC103844246
vvi-u.5	100261301	uncharacterized LOC100261301
mtr-u.5	11424438	uncharacterized LOC11424438
ghi-r.1	107914959	uncharacterized LOC107914959
ghi-r.1	107886606	uncharacterized LOC107886606
ghi-r.1	107914960	uncharacterized LOC107914960
bna-r.1	106401247	uncharacterized LOC106401247
bna-r.1	106371005	uncharacterized LOC106371005
cit-r.1	102625304	uncharacterized LOC102625304

Annotation

functional annotation

KEGG

GO BP

GO:0006396 [list] [network] RNA processing

(579 genes)

IEA

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(4214 genes)

IEA

Protein

XP_006340887.1 [sequence] [blastp]
XP_015160847.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, nucl_plas 4, plas 2, chlo 1, cyto 1	(predict for XP_006340887.1)
nucl 4, nucl_plas 4, plas 2, chlo 1, cyto 1	(predict for XP_015160847.1)

Subcellular
localization
TargetP

other 8	(predict for XP_006340887.1)
other 8	(predict for XP_015160847.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102581917	sly-u.5 for 101245498	nta-r.1 for 107781058	nta-r.1 for 107821231	ath-u.5 for TPR4	gma-u.5 for 100783167	gma-u.5 for 100805375	bra-r.6 for 103844246	vvi-u.5 for 100261301	mtr-u.5 for 11424438	ghi-r.1 for 107914959	ghi-r.1 for 107886606	ghi-r.1 for 107914960	bna-r.1 for 106401247	bna-r.1 for 106371005	cit-r.1 for 102625304

Ortholog

Ortholog ID: 12490

Species

sot

sly

nta

ath

gma

bra

vvi

mtr

ghi

bna

cit

Symbol

TPR4

Function^*

uncharacterized LOC102581917

uncharacterized LOC101245498

uncharacterized LOC107781058

uncharacterized LOC107821231

Tetratricopeptide repeat (TPR)-like superfamily protein

uncharacterized LOC100783167

uncharacterized LOC100805375

uncharacterized LOC103844246

uncharacterized LOC100261301

uncharacterized LOC11424438

uncharacterized LOC107914959

uncharacterized LOC107886606

uncharacterized LOC107914960

uncharacterized LOC106401247

uncharacterized LOC106371005

uncharacterized LOC102625304

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00900	Terpenoid backbone biosynthesis	2
ath00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00260	Glycine, serine and threonine metabolism	2
gma00350	Tyrosine metabolism	2
gma00360	Phenylalanine metabolism	2
gma00410	beta-Alanine metabolism	2
gma00950	Isoquinoline alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00051	Fructose and mannose metabolism	3
bra00480	Glutathione metabolism	2
bra03010	Ribosome	2
bra00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ghi01230	Biosynthesis of amino acids	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00220	Arginine biosynthesis	4
bna00250	Alanine, aspartate and glutamate metabolism	4
bna00260	Glycine, serine and threonine metabolism	4
bna00630	Glyoxylate and dicarboxylate metabolism	4
bna00710	Carbon fixation by Calvin cycle	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00220	Arginine biosynthesis	5
bna00250	Alanine, aspartate and glutamate metabolism	5
bna00260	Glycine, serine and threonine metabolism	5
bna00630	Glyoxylate and dicarboxylate metabolism	5
bna00710	Carbon fixation by Calvin cycle	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00280	Valine, leucine and isoleucine degradation	2
cit00640	Propanoate metabolism	2
cit01210	2-Oxocarboxylic acid metabolism	2
cit01200	Carbon metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

102581917

101245498

107781058

107821231

839500

100783167

100805375

103844246

100261301

11424438

107914959

107886606

107914960

106401247

106371005

102625304

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 102581917 (sot-r.1 coexpression data)

Top 50 enrichment test to 102581917 (sot-r.1 coexpression data)


Species	sot	sly	nta	ath	gma	bra	vvi	mtr	ghi	bna	cit	cre	ppo	hvu	tae	bdi	osa	zma	sbi
Paralog	1	1	2	1	2	1	1	1	3	2	1	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102581917 (sot-r.1 coexpression data)

Top 50 enrichment test to 102581917 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**