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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102582930   polyadenylation and cleavage factor homolog 4 
 sly-u.5   101252266   polyadenylation and cleavage factor homolog 4 
 ath-u.5   PCFS4   PCF11P-similar protein 4 
 gma-u.5   100794796   polyadenylation and cleavage factor homolog 4 
 gma-u.5   100787354   polyadenylation and cleavage factor homolog 4 
 vvi-u.5   100255600   polyadenylation and cleavage factor homolog 4 
 ppo-u.5   7485427   polyadenylation and cleavage factor homolog 4 
 ppo-u.5   7479082   polyadenylation and cleavage factor homolog 4 
 mtr-u.5   25495279   polyadenylation and cleavage factor homolog 4 
 osa-u.5   4344833   polyadenylation and cleavage factor homolog 4 
 zma-u.5   100280286   uncharacterized LOC100280286 
 zma-u.5   103653026   polyadenylation and cleavage factor homolog 4 

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Top 50 coexpressed genes to 102582930 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102582930 (sot-r.1 coexpression data)

CoexMap"102582930"


sotLOC102582930 | Entrez gene ID : 102582930      
Species sot sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi bra sbi tae nta bna
Paralog 1 1 1 2 1 2 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot03015 [list] [network] mRNA surveillance pathway (134 genes)
GO BP
GO:0006369 [list] [network] termination of RNA polymerase II transcription  (4 genes)  IEA  
GO:0031124 [list] [network] mRNA 3'-end processing  (18 genes)  IEA  
GO CC
GO:0005849 [list] [network] mRNA cleavage factor complex  (13 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4349 genes)  IEA  
GO MF
GO:0000993 [list] [network] RNA polymerase II complex binding  (16 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (296 genes)  IEA  
Protein XP_006342553.1 [sequence] [blastp]
XP_015162085.1 [sequence] [blastp]
XP_015162086.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_006342553.1)
nucl 9  (predict for XP_015162085.1)
chlo 5,  nucl 4,  E.R. 1,  pero 1  (predict for XP_015162086.1)
Subcellular
localization
TargetP
other 3  (predict for XP_006342553.1)
other 3  (predict for XP_015162085.1)
mito 2  (predict for XP_015162086.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102582930

.
sly-u.5
for
101252266

.
ath-u.5
for
PCFS4

.
gma-u.5
for
100794796

.
gma-u.5
for
100787354

.
vvi-u.5
for
100255600

.
ppo-u.5
for
7485427

.
ppo-u.5
for
7479082

.
mtr-u.5
for
25495279

.
osa-u.5
for
4344833

.
zma-u.5
for
100280286

.
zma-u.5
for
103653026

.


Ortholog ID: 8525
Species ath gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PCFS4 LOC100787354 LOC101252266 LOC4344833 LOC103653026 LOC100280286 LOC103839806 LOC100255600 LOC7479082 LOC7485427 LOC25495279 LOC123146932 LOC123160793 LOC123412288 LOC107961975 LOC107901935 LOC106415234 LOC106366877 CHLRE_06g265602v5 LOC8071118 LOC102582930 LOC102631201 LOC100826665 LOC107759140 LOC107812177
Function* PCF11P-similar protein 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 uncharacterized LOC100280286 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like uncharacterized protein uncharacterized LOC8071118 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4 polyadenylation and cleavage factor homolog 4-like polyadenylation and cleavage factor homolog 4-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 4
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 3
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 6
ghi03250 Viral life cycle - HIV-1 6
ghi03460 Fanconi anemia pathway 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 6
ghi03250 Viral life cycle - HIV-1 6
ghi03460 Fanconi anemia pathway 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03082 ATP-dependent chromatin remodeling 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825827 100787354 101252266 4344833 103653026 100280286 103839806 100255600 7479082 7485427 25495279 123146932 123160793 123412288 107961975 107901935 106415234 106366877 5721951 8071118 102582930 102631201 100826665 107759140 107812177
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