ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102585235	squalene epoxidase 3-like
sot-r.1	102579136	squalene monooxygenase-like
sly-u.5	112940012	squalene epoxidase 3-like
sly-u.5	SQO1	squalene monooxygenase
nta-r.1	107821041	squalene epoxidase 3
nta-r.1	107771747	squalene monooxygenase SE1
nta-r.1	107761131	squalene epoxidase 3
ath-u.5	SQE2	squalene epoxidase 2
ath-u.5	SQE3	squalene epoxidase 3
ath-u.5	XF1	FAD/NAD(P)-binding oxidoreductase family protein
gma-u.5	100820031	squalene monooxygenase SE1
gma-u.5	100810547	squalene epoxidase 3
gma-u.5	100808856	squalene monooxygenase SE1
bra-r.6	103857940	squalene epoxidase 3
bra-r.6	103838611	squalene epoxidase 1
bra-r.6	103864397	squalene epoxidase 3
vvi-u.5	100854014	squalene monooxygenase SE2
vvi-u.5	100254037	squalene monooxygenase SE1
vvi-u.5	100265235	squalene monooxygenase SE1
ppo-u.5	7497730	squalene monooxygenase SE1
mtr-u.5	25496080	squalene monooxygenase SE1
mtr-u.5	11415396	squalene monooxygenase SE1
mtr-u.5	25496089	squalene monooxygenase SE1
ghi-r.1	107905167	squalene monooxygenase SE1
ghi-r.1	107908577	squalene monooxygenase SE1
ghi-r.1	107916766	squalene monooxygenase SE1
bna-r.1	106432517	squalene epoxidase 3
bna-r.1	111211195	squalene epoxidase 1-like
bna-r.1	106426862	squalene epoxidase 3
osa-u.5	4332152	squalene monooxygenase SE1
osa-u.5	4332153	squalene monooxygenase SE1
zma-u.5	100274333	uncharacterized LOC100274333
zma-u.5	100285558	uncharacterized LOC100285558
tae-r.2	123092891	squalene monooxygenase SE1
tae-r.2	123085101	squalene monooxygenase SE1
tae-r.2	123098170	squalene monooxygenase SE1
hvu-r.1	123449244	squalene monooxygenase SE1-like
sbi-r.1	8056854	squalene monooxygenase
bdi-r.1	100839945	squalene monooxygenase
cre-r.1	CHLRE_17g734644v5	uncharacterized protein

Top 50 coexpressed genes to 102585235 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102585235 (sot-r.1 coexpression data)

CoexMap"102585235"

[Cytoscape]

Annotation

functional annotation

KEGG

sot00100 [list] [network] Steroid biosynthesis (40 genes)

sot00909 [list] [network] Sesquiterpenoid and triterpenoid biosynthesis (32 genes)

GO BP

GO:0016126 [list] [network] sterol biosynthetic process

(13 genes)

IEA

GO CC

GO:0005783 [list] [network] endoplasmic reticulum	(475 genes)	IEA
GO:0016020 [list] [network] membrane	(3081 genes)	IEA

GO MF

GO:0004506 [list] [network] squalene monooxygenase activity	(2 genes)	IEA
GO:0050660 [list] [network] flavin adenine dinucleotide binding	(152 genes)	IEA

Protein

XP_006364402.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, plas 1, pero 1

(predict for XP_006364402.1)

Subcellular
localization
TargetP

chlo 6

(predict for XP_006364402.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102585235	sot-r.1 for 102579136	sly-u.5 for 112940012	sly-u.5 for SQO1	nta-r.1 for 107821041	nta-r.1 for 107771747	nta-r.1 for 107761131	ath-u.5 for SQE2	ath-u.5 for SQE3	ath-u.5 for XF1	gma-u.5 for 100820031	gma-u.5 for 100810547	gma-u.5 for 100808856	bra-r.6 for 103857940	bra-r.6 for 103838611	bra-r.6 for 103864397	vvi-u.5 for 100854014	vvi-u.5 for 100254037	vvi-u.5 for 100265235	ppo-u.5 for 7497730	mtr-u.5 for 25496080	mtr-u.5 for 11415396	mtr-u.5 for 25496089	ghi-r.1 for 107905167	ghi-r.1 for 107908577	ghi-r.1 for 107916766	bna-r.1 for 106432517	bna-r.1 for 111211195	bna-r.1 for 106426862	osa-u.5 for 4332152	osa-u.5 for 4332153	zma-u.5 for 100274333	zma-u.5 for 100285558	tae-r.2 for 123092891	tae-r.2 for 123085101	tae-r.2 for 123098170	hvu-r.1 for 123449244	sbi-r.1 for 8056854	bdi-r.1 for 100839945	cre-r.1 for CHLRE_17g734644v5

Ortholog

Ortholog ID: 1909

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SQO1

SQE2

SQE3

XF1

Function^*

squalene epoxidase 3-like

squalene monooxygenase-like

squalene epoxidase 3-like

squalene monooxygenase

squalene monooxygenase SE1

squalene epoxidase 3

squalene monooxygenase SE1

squalene epoxidase 2

squalene epoxidase 3

FAD/NAD(P)-binding oxidoreductase family protein

squalene epoxidase 3

squalene monooxygenase SE1

squalene epoxidase 3

squalene epoxidase 1

squalene epoxidase 3

squalene monooxygenase SE1

squalene epoxidase 3

squalene monooxygenase SE1

squalene epoxidase 3

squalene epoxidase 2, mitochondrial

squalene epoxidase 3

squalene epoxidase 1-like

squalene monooxygenase SE1

uncharacterized LOC100274333

uncharacterized LOC100285558

squalene monooxygenase SE1

squalene monooxygenase SE1-like

squalene monooxygenase

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00860	Porphyrin metabolism	3
sot00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00999	Biosynthesis of various plant secondary metabolites	11
sot00100	Steroid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	2
nta00909	Sesquiterpenoid and triterpenoid biosynthesis	2
nta00230	Purine metabolism	2
nta00920	Sulfur metabolism	2
nta01320	Sulfur cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	2
nta00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	2
nta00909	Sesquiterpenoid and triterpenoid biosynthesis	2
nta00230	Purine metabolism	2
nta00920	Sulfur metabolism	2
nta01320	Sulfur cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00900	Terpenoid backbone biosynthesis	2
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00100	Steroid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	3
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00100	Steroid biosynthesis	2
gma00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma02010	ABC transporters	4
gma04981	Folate transport and metabolism	4
gma00062	Fatty acid elongation	2
gma04626	Plant-pathogen interaction	2
gma00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	2
bra00100	Steroid biosynthesis	2
bra00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	4
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	5
vvi01230	Biosynthesis of amino acids	3
vvi00670	One carbon pool by folate	3
vvi00620	Pyruvate metabolism	2
vvi00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00195	Photosynthesis	5
ppo01200	Carbon metabolism	3
ppo00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00909	Sesquiterpenoid and triterpenoid biosynthesis	8
mtr00999	Biosynthesis of various plant secondary metabolites	5
mtr00100	Steroid biosynthesis	3
mtr00062	Fatty acid elongation	2
mtr01040	Biosynthesis of unsaturated fatty acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00909	Sesquiterpenoid and triterpenoid biosynthesis	5
mtr00100	Steroid biosynthesis	3
mtr00999	Biosynthesis of various plant secondary metabolites	2
mtr00062	Fatty acid elongation	2
mtr01040	Biosynthesis of unsaturated fatty acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00100	Steroid biosynthesis	2
mtr00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	5
ghi00941	Flavonoid biosynthesis	5
ghi00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	5
ghi00100	Steroid biosynthesis	2
ghi00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00100	Steroid biosynthesis	5
ghi00909	Sesquiterpenoid and triterpenoid biosynthesis	5
ghi00040	Pentose and glucuronate interconversions	4
ghi00330	Arginine and proline metabolism	4
ghi00410	beta-Alanine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00100	Steroid biosynthesis	4
bna00909	Sesquiterpenoid and triterpenoid biosynthesis	2
bna00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna00100	Steroid biosynthesis	2
bna00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	3
bna00100	Steroid biosynthesis	2
bna00909	Sesquiterpenoid and triterpenoid biosynthesis	2
bna00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00061	Fatty acid biosynthesis	3
zma01212	Fatty acid metabolism	3
zma01040	Biosynthesis of unsaturated fatty acids	2
zma00100	Steroid biosynthesis	2
zma00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00100	Steroid biosynthesis	2
zma00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	7
tae00100	Steroid biosynthesis	3
tae00909	Sesquiterpenoid and triterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	3
tae00565	Ether lipid metabolism	3
tae04144	Endocytosis	3
tae00100	Steroid biosynthesis	3
tae00909	Sesquiterpenoid and triterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	3
tae00565	Ether lipid metabolism	3
tae04144	Endocytosis	3
tae00100	Steroid biosynthesis	3
tae00909	Sesquiterpenoid and triterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	8
hvu00360	Phenylalanine metabolism	5
hvu00941	Flavonoid biosynthesis	3
hvu00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
hvu00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	4
sbi00053	Ascorbate and aldarate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00100	Steroid biosynthesis	4

Expression

Expression pattern

Entrez Gene ID^*

102585235

102579136

112940012

101250012

107771747

107761131

107828762

816814

829932

842213

100810547

100804406

100796946

103857940

103838611

103864397

100254037

100265235

7497730

25496080

25496089

25482032

107935261

107938317

106432517

106392124

106446452

102610049

4332152

4332153

100274333

100285558

123092891

123085101

123098170

123449244

8056854

100839945

66057114

The preparation time of this page was 0.3 [sec].


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	osa	zma	tae	hvu	sbi	bdi	cre	cit
Paralog	2	2	3	3	3	3	3	1	3	3	3	2	2	3	1	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102585235 (sot-r.1 coexpression data)

Top 50 enrichment test to 102585235 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**