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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101264490   DNA repair protein RAD51 homolog 4 
 nta-r.1   107785938   DNA repair protein RAD51 homolog 4-like 
 nta-r.1   107806596   DNA repair protein RAD51 homolog 4 
 ath-u.5   RAD51D   DNA repair RAD51-like protein 
 gma-u.5   100780427   DNA repair protein RAD51 homolog 4-like 
 vvi-u.5   100257115   DNA repair protein RAD51 homolog 4 
 mtr-u.5   25492474   DNA repair protein RAD51 homolog 4 
 ghi-r.1   107906167   DNA repair protein RAD51 homolog 4 
 ghi-r.1   107959080   DNA repair protein RAD51 homolog 4 
 osa-u.5   4346376   DNA repair protein RAD51 homolog 4 
 zma-u.5   100282783   uncharacterized LOC100282783 
 tae-r.2   100192176   DNA repair protein RAD51 homolog 4 
 bdi-r.1   100827134   DNA repair protein RAD51 homolog 4 
 cre-r.1   CHLRE_03g184651v5   uncharacterized protein 

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Top 50 coexpressed genes to 101264490 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101264490 (sly-u.5 coexpression data)

CoexMap"102587995"


sotLOC102587995 | Entrez gene ID : 102587995    
Species sly nta ath gma vvi mtr ghi osa zma tae bdi cre hvu sot bna ppo sbi bra cit
Paralog 1 2 1 1 1 1 2 1 1 1 1 1 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot03440 [list] [network] Homologous recombination (56 genes)
GO BP
GO:0042148 [list] [network] DNA strand invasion  (4 genes)  IEA  
GO:0007131 [list] [network] reciprocal meiotic recombination  (31 genes)  IEA  
GO:0000723 [list] [network] telomere maintenance  (32 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (64 genes)  IEA  
GO CC
GO:0033063 [list] [network] Rad51B-Rad51C-Rad51D-XRCC2 complex  (7 genes)  IEA  
GO:0005815 [list] [network] microtubule organizing center  (15 genes)  IEA  
GO:0005657 [list] [network] replication fork  (37 genes)  IEA  
GO MF
GO:0000400 [list] [network] four-way junction DNA binding  (5 genes)  IEA  
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (22 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (58 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2117 genes)  IEA  
Protein XP_006363374.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  chlo_mito 2,  cyto 1  (predict for XP_006363374.1)
Subcellular
localization
TargetP
other 7  (predict for XP_006363374.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101264490
nta-r.1
for
107785938
nta-r.1
for
107806596
ath-u.5
for
RAD51D
gma-u.5
for
100780427
vvi-u.5
for
100257115
mtr-u.5
for
25492474
ghi-r.1
for
107906167
ghi-r.1
for
107959080
osa-u.5
for
4346376
zma-u.5
for
100282783
tae-r.2
for
100192176
bdi-r.1
for
100827134
cre-r.1
for
CHLRE_03g184651v5


Ortholog ID: 11460
Species sly nta nta ath gma vvi mtr ghi ghi osa zma tae bdi cre
Symbol LOC101264490 LOC107785938 LOC107806596 RAD51D LOC100780427 LOC100257115 LOC25492474 LOC107906167 LOC107959080 LOC4346376 LOC100282783 LOC100192176 LOC100827134 CHLRE_03g184651v5
Function* DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4-like DNA repair protein RAD51 homolog 4 DNA repair RAD51-like protein DNA repair protein RAD51 homolog 4-like DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 uncharacterized LOC100282783 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 9
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101264490 107785938 107806596 837289 100780427 100257115 25492474 107906167 107959080 4346376 100282783 100192176 100827134 5717423
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