ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102591210	chaperonin 60 subunit alpha 2, chloroplastic
sot-r.1	102577525	chaperonin-60 beta subunit
sot-r.1	102577751	ruBisCO large subunit-binding protein subunit beta, chloroplastic
sot-r.1	102587813	ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like
sly-u.5	101266598	ruBisCO large subunit-binding protein subunit alpha
sly-u.5	101250405	chaperonin 60 subunit beta 4, chloroplastic
sly-u.5	101253117	ruBisCO large subunit-binding protein subunit beta, chloroplastic
nta-r.1	107819392	ruBisCO large subunit-binding protein subunit beta, chloroplastic
nta-r.1	107821154	ruBisCO large subunit-binding protein subunit alpha
nta-r.1	107826800	ruBisCO large subunit-binding protein subunit alpha
ath-u.5	Cpn60beta3	TCP-1/cpn60 chaperonin family protein
ath-u.5	CPN60A	chaperonin-60alpha
ath-u.5	Cpn60beta2	TCP-1/cpn60 chaperonin family protein
gma-u.5	100806471	ruBisCO large subunit-binding protein subunit alpha
gma-u.5	100775463	ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like
gma-u.5	100819369	ruBisCO large subunit-binding protein subunit beta, chloroplastic
bra-r.6	103859519	chaperonin 60 subunit beta 2, chloroplastic
bra-r.6	103856922	chaperonin 60 subunit beta 3, chloroplastic
bra-r.6	103851197	chaperonin 60 subunit alpha 2, chloroplastic
vvi-u.5	100253324	ruBisCO large subunit-binding protein subunit alpha
vvi-u.5	100257653	chaperonin 60 subunit alpha 2, chloroplastic
vvi-u.5	100263832	ruBisCO large subunit-binding protein subunit beta, chloroplastic
ppo-u.5	7491161	ruBisCO large subunit-binding protein subunit alpha
ppo-u.5	7482225	chaperonin 60 subunit beta 4, chloroplastic
ppo-u.5	7483228	chaperonin 60 subunit beta 2, chloroplastic
mtr-u.5	11443427	chaperonin 60 subunit alpha 2, chloroplastic
mtr-u.5	25482039	ruBisCO large subunit-binding protein subunit beta, chloroplastic
mtr-u.5	25492419	ruBisCO large subunit-binding protein subunit alpha, chloroplastic
ghi-r.1	107895043	chaperonin 60 subunit beta 4, chloroplastic
ghi-r.1	107896231	chaperonin 60 subunit beta 2, chloroplastic
ghi-r.1	107906140	ruBisCO large subunit-binding protein subunit beta, chloroplastic
bna-r.1	106431421	chaperonin 60 subunit alpha 2, chloroplastic
bna-r.1	106425605	chaperonin 60 subunit beta 4, chloroplastic
bna-r.1	106423897	RuBisCO large subunit-binding protein subunit alpha, chloroplastic-like
cit-r.1	102609990	ruBisCO large subunit-binding protein subunit beta, chloroplastic
cit-r.1	102611539	chaperonin 60 subunit alpha 2, chloroplastic
cit-r.1	102614876	ruBisCO large subunit-binding protein subunit alpha
osa-u.5	107275738	chaperonin 60 subunit beta 4, chloroplastic
osa-u.5	4327993	ruBisCO large subunit-binding protein subunit beta, chloroplastic
osa-u.5	4339910	ruBisCO large subunit-binding protein subunit beta, chloroplastic
zma-u.5	103630297	ruBisCO large subunit-binding protein subunit alpha, chloroplastic
zma-u.5	103633537	ruBisCO large subunit-binding protein subunit beta, chloroplastic
zma-u.5	103647277	uncharacterized LOC103647277
tae-r.2	123135384	ruBisCO large subunit-binding protein subunit beta, chloroplastic
tae-r.2	123088383	ruBisCO large subunit-binding protein subunit beta, chloroplastic
tae-r.2	123043310	ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like
hvu-r.1	123452026	ruBisCO large subunit-binding protein subunit alpha-like
hvu-r.1	123426809	ruBisCO large subunit-binding protein subunit beta, chloroplastic-like
hvu-r.1	123424470	ruBisCO large subunit-binding protein subunit alpha, chloroplastic
sbi-r.1	8061304	ruBisCO large subunit-binding protein subunit alpha, chloroplastic
sbi-r.1	8066904	ruBisCO large subunit-binding protein subunit beta, chloroplastic
sbi-r.1	8059238	ruBisCO large subunit-binding protein subunit alpha
bdi-r.1	100822991	ruBisCO large subunit-binding protein subunit alpha
bdi-r.1	100827537	chaperonin 60 subunit beta 4, chloroplastic
bdi-r.1	100837414	ruBisCO large subunit-binding protein subunit beta, chloroplastic
cre-r.1	CHLRE_04g231222v5	uncharacterized protein
cre-r.1	CHLRE_17g741450v5	uncharacterized protein
cre-r.1	CHLRE_07g339150v5	uncharacterized protein

Top 50 coexpressed genes to 102591210 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102591210 (sot-r.1 coexpression data)

CoexMap"102591210"

[Cytoscape]

Annotation

functional annotation

KEGG

sot03018 [list] [network] RNA degradation (117 genes)

GO BP

GO:0042026 [list] [network] protein refolding

(18 genes)

IEA

GO CC

GO MF

GO:0140662 [list] [network] ATP-dependent protein folding chaperone	(52 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2117 genes)	IEA

Protein

XP_006365041.1 [sequence] [blastp]
XP_006365042.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 3, nucl 1, plas 1, E.R. 1, cysk 1, cysk_nucl 1, nucl_plas 1, cysk_plas 1, E.R._plas 1	(predict for XP_006365041.1)
cyto 4, chlo 3, nucl 1, plas 1, pero 1, cysk 1, cysk_nucl 1, nucl_plas 1, cysk_plas 1	(predict for XP_006365042.1)

Subcellular
localization
TargetP

chlo 5, other 5	(predict for XP_006365041.1)
chlo 5, other 5	(predict for XP_006365042.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102591210	sot-r.1 for 102577525	sot-r.1 for 102577751	sot-r.1 for 102587813	sly-u.5 for 101266598	sly-u.5 for 101250405	sly-u.5 for 101253117	nta-r.1 for 107819392	nta-r.1 for 107821154	nta-r.1 for 107826800	ath-u.5 for Cpn60beta3	ath-u.5 for CPN60A	ath-u.5 for Cpn60beta2	gma-u.5 for 100806471	gma-u.5 for 100775463	gma-u.5 for 100819369	bra-r.6 for 103859519	bra-r.6 for 103856922	bra-r.6 for 103851197	vvi-u.5 for 100253324	vvi-u.5 for 100257653	vvi-u.5 for 100263832	ppo-u.5 for 7491161	ppo-u.5 for 7482225	ppo-u.5 for 7483228	mtr-u.5 for 11443427	mtr-u.5 for 25482039	mtr-u.5 for 25492419	ghi-r.1 for 107895043	ghi-r.1 for 107896231	ghi-r.1 for 107906140	bna-r.1 for 106431421	bna-r.1 for 106425605	bna-r.1 for 106423897	cit-r.1 for 102609990	cit-r.1 for 102611539	cit-r.1 for 102614876	osa-u.5 for 107275738	osa-u.5 for 4327993	osa-u.5 for 4339910	zma-u.5 for 103630297	zma-u.5 for 103633537	zma-u.5 for 103647277	tae-r.2 for 123135384	tae-r.2 for 123088383	tae-r.2 for 123043310	hvu-r.1 for 123452026	hvu-r.1 for 123426809	hvu-r.1 for 123424470	sbi-r.1 for 8061304	sbi-r.1 for 8066904	sbi-r.1 for 8059238	bdi-r.1 for 100822991	bdi-r.1 for 100827537	bdi-r.1 for 100837414	cre-r.1 for CHLRE_04g231222v5	cre-r.1 for CHLRE_17g741450v5	cre-r.1 for CHLRE_07g339150v5

Ortholog

Ortholog ID: 357

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CPN60B

Function^*

chaperonin-60 beta subunit

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

chaperonin 60 subunit beta 4, chloroplastic

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

ruBisCO large subunit-binding protein subunit beta, chloroplastic-like

ruBisCO large subunit-binding protein subunit beta, chloroplastic

TCP-1/cpn60 chaperonin family protein

chaperonin 60 beta

chaperonin 60 subunit alpha 2, chloroplastic

ruBisCO large subunit-binding protein subunit beta, chloroplastic

chaperonin 60 subunit beta 3, chloroplastic

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

chaperonin 60 subunit alpha 2, chloroplastic

chaperonin 60 subunit beta 4, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

chaperonin 60 subunit beta 2, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha, chloroplastic

ruBisCO large subunit-binding protein subunit beta, chloroplastic

chaperonin 60 subunit beta 4, chloroplastic

chaperonin 60 subunit alpha 2, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

chaperonin 60 subunit beta 4, chloroplastic

ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like

ruBisCO large subunit-binding protein subunit beta, chloroplastic

chaperonin 60 subunit alpha 2, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

uncharacterized LOC103647277

RuBisCO large subunit-binding protein subunit alpha

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like

ruBisCO large subunit-binding protein subunit alpha-like

ruBisCO large subunit-binding protein subunit beta, chloroplastic-like

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

chaperonin 60 subunit beta 4, chloroplastic

ruBisCO large subunit-binding protein subunit beta, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot04141	Protein processing in endoplasmic reticulum	2
sot01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot00020	Citrate cycle (TCA cycle)	2
sot00270	Cysteine and methionine metabolism	2
sot00566	Sulfoquinovose metabolism	2
sot00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	5
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00061	Fatty acid biosynthesis	6
sly01212	Fatty acid metabolism	6
sly00620	Pyruvate metabolism	3
sly01200	Carbon metabolism	3
sly00780	Biotin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
nta01230	Biosynthesis of amino acids	5
nta00071	Fatty acid degradation	2
nta00592	alpha-Linolenic acid metabolism	2
nta01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	6
nta04141	Protein processing in endoplasmic reticulum	5
nta00710	Carbon fixation by Calvin cycle	4
nta01200	Carbon metabolism	4
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2
nta00500	Starch and sucrose metabolism	2
nta00730	Thiamine metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	5
ath03018	RNA degradation	3
ath03040	Spliceosome	3
ath04144	Endocytosis	3
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	3
ath04141	Protein processing in endoplasmic reticulum	3
ath00970	Aminoacyl-tRNA biosynthesis	2
ath03040	Spliceosome	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	3
bra04141	Protein processing in endoplasmic reticulum	2
bra03008	Ribosome biogenesis in eukaryotes	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	3
bra00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	4
bra03040	Spliceosome	2
bra04141	Protein processing in endoplasmic reticulum	2
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	5
vvi04141	Protein processing in endoplasmic reticulum	5
vvi04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	4
ppo04141	Protein processing in endoplasmic reticulum	3
ppo00620	Pyruvate metabolism	3
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	4
ppo04141	Protein processing in endoplasmic reticulum	3
ppo03040	Spliceosome	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	4
ppo04141	Protein processing in endoplasmic reticulum	3
ppo03040	Spliceosome	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	8
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	9
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6
bna00230	Purine metabolism	3
bna00240	Pyrimidine metabolism	3
bna01232	Nucleotide metabolism	3
bna01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6
bna00500	Starch and sucrose metabolism	2
bna00520	Amino sugar and nucleotide sugar metabolism	2
bna01250	Biosynthesis of nucleotide sugars	2
bna00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	3
cit03020	RNA polymerase	2
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit00860	Porphyrin metabolism	2
cit01240	Biosynthesis of cofactors	2
cit03018	RNA degradation	2
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	4
osa04626	Plant-pathogen interaction	3
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa04626	Plant-pathogen interaction	3
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	3
osa03018	RNA degradation	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3
zma04626	Plant-pathogen interaction	3
zma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3
zma03040	Spliceosome	2
zma04144	Endocytosis	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5
tae02010	ABC transporters	3
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	7
tae03010	Ribosome	3
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2
hvu03030	DNA replication	2
hvu03410	Base excision repair	2
hvu03420	Nucleotide excision repair	2
hvu03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	3
hvu01230	Biosynthesis of amino acids	3
hvu00261	Monobactam biosynthesis	2
hvu00300	Lysine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	4
sbi04626	Plant-pathogen interaction	3
sbi00620	Pyruvate metabolism	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	4
sbi04626	Plant-pathogen interaction	4
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	4
sbi00730	Thiamine metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	3
bdi00970	Aminoacyl-tRNA biosynthesis	3
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03018	RNA degradation	3

Expression

Expression pattern

Entrez Gene ID^*

102577525

102577751

102594819

101250405

101259035

101265242

107821154

107830331

107783939

820549

832000

841996

100786724

100795157

100785937

103856922

103832584

103829780

100253324

100257653

100251252

7491161

7483228

18098223

25482039

25492419

25482040

107895043

107945220

107958560

106425605

106400776

125577231

102609990

102611539

102614876

4327993

4339910

9270136

103647277

100281701

103629384

123142923

543499

123452026

123403144

8066904

8059238

8054346

100827537

100837414

100842360

5729243

5726659

5717970

The preparation time of this page was 2.1 [sec].


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102591210 (sot-r.1 coexpression data)

Top 50 enrichment test to 102591210 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**