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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102598827   DNA gyrase subunit A, chloroplastic/mitochondrial 
 sly-u.5   101251225   DNA gyrase subunit A, chloroplastic/mitochondrial 
 ath-u.5   GYRA   DNA GYRASE A 
 gma-u.5   100791541   DNA gyrase subunit A, chloroplastic/mitochondrial 
 vvi-u.5   100250492   DNA gyrase subunit A, chloroplastic/mitochondrial 
 ppo-u.5   7491584   DNA gyrase subunit A, chloroplastic/mitochondrial 
 mtr-u.5   11429265   DNA gyrase subunit A, chloroplastic/mitochondrial 
 osa-u.5   4334546   probable DNA gyrase subunit A, chloroplastic/mitochondrial 
 zma-u.5   103625778   probable DNA gyrase subunit A, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to 102598827 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102598827 (sot-r.1 coexpression data)

CoexMap"102598827"


sotLOC102598827 | Entrez gene ID : 102598827    
Species sot sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi nta tae cre
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006265 [list] [network] DNA topological change  (9 genes)  IEA  
GO CC
GO:0009330 [list] [network] DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex  (2 genes)  IEA  
GO:0005694 [list] [network] chromosome  (336 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4349 genes)  IEA  
GO MF
GO:0003918 [list] [network] DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity  (7 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1885 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2117 genes)  IEA  
Protein XP_006347706.1 [sequence] [blastp]
XP_006347707.1 [sequence] [blastp]
XP_006347708.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_006347706.1)
chlo 9  (predict for XP_006347707.1)
chlo 9  (predict for XP_006347708.1)
Subcellular
localization
TargetP
chlo 8,  mito 3  (predict for XP_006347706.1)
chlo 8,  mito 3  (predict for XP_006347707.1)
chlo 8,  mito 3  (predict for XP_006347708.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102598827
sly-u.5
for
101251225
ath-u.5
for
GYRA
gma-u.5
for
100791541
vvi-u.5
for
100250492
ppo-u.5
for
7491584
mtr-u.5
for
11429265
osa-u.5
for
4334546
zma-u.5
for
103625778


Ortholog ID: 10753
Species sot sly nta nta ath gma bra vvi ppo mtr ghi ghi bna bna cit osa zma tae tae hvu sbi bdi cre
Symbol LOC102598827 LOC101251225 LOC107807875 LOC107779491 GYRA LOC100791541 LOC103859359 LOC100250492 LOC7491584 LOC11429265 LOC107927581 LOC121229699 LOC106389076 LOC106353026 LOC102623274 LOC4334546 LOC103625778 LOC123105600 LOC123113911 LOC123452945 LOC8057393 LOC100842594 CHLRE_04g221650v5
Function* DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial-like DNA gyrase subunit A, chloroplastic/mitochondrial DNA GYRASE A DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial-like DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta00230 Purine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01232 Nucleotide metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta00230 Purine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01232 Nucleotide metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 4
vvi03015 mRNA surveillance pathway 3
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 2
zma04146 Peroxisome 2
zma00061 Fatty acid biosynthesis 2
zma01212 Fatty acid metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 4
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
tae01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
tae01210 2-Oxocarboxylic acid metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102598827 101251225 107807875 107779491 820238 100791541 103859359 100250492 7491584 11429265 107927581 121229699 106389076 106353026 102623274 4334546 103625778 123105600 123113911 123452945 8057393 100842594 5717863
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