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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102599047   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 sly-u.5   101245783   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 nta-r.1   107808053   putative polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 nta-r.1   107782252   putative polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 ath-u.5   RIF10   polyribonucleotide nucleotidyltransferase 
 gma-u.5   100819741   polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 gma-u.5   100785430   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 bra-r.6   103859008   polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 bra-r.6   103855181   polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 vvi-u.5   100265692   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 ppo-u.5   7482382   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 ppo-u.5   7491063   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 mtr-u.5   11438450   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 ghi-r.1   107913610   polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 ghi-r.1   107891187   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 bna-r.1   125583349   polyribonucleotide nucleotidyltransferase 1, chloroplastic-like 
 bna-r.1   125587865   polyribonucleotide nucleotidyltransferase 1, chloroplastic-like 
 bna-r.1   106447612   polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 cit-r.1   102615727   polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 osa-u.5   4342497   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 zma-u.5   103631988   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 tae-r.2   123188625   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 tae-r.2   123052790   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 tae-r.2   123044832   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 hvu-r.1   123426165   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 sbi-r.1   8060701   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 bdi-r.1   100824934   probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 
 cre-r.1   CHLRE_04g214501v5   uncharacterized protein 

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Top 50 coexpressed genes to 102599047 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102599047 (sot-r.1 coexpression data)

CoexMap"102599047"


sotLOC102599047 | Entrez gene ID : 102599047      
Species sot sly nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 1 1 2 1 2 2 1 2 1 2 3 1 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot03018 [list] [network] RNA degradation (117 genes)
GO BP
GO:0000958 [list] [network] mitochondrial mRNA catabolic process  (2 genes)  IEA  
GO:0000965 [list] [network] mitochondrial RNA 3'-end processing  (7 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (113 genes)  IEA  
GO:0005739 [list] [network] mitochondrion  (603 genes)  IEA  
GO:0005829 [list] [network] cytosol  (756 genes)  IEA  
GO MF
GO:0004654 [list] [network] polyribonucleotide nucleotidyltransferase activity  (2 genes)  IEA  
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (29 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1335 genes)  IEA  
Protein XP_015160496.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  nucl 2,  cyto 1  (predict for XP_015160496.1)
Subcellular
localization
TargetP
chlo 3,  mito 3  (predict for XP_015160496.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102599047
sly-u.5
for
101245783
nta-r.1
for
107808053
nta-r.1
for
107782252
ath-u.5
for
RIF10
gma-u.5
for
100819741
gma-u.5
for
100785430
bra-r.6
for
103859008
bra-r.6
for
103855181
vvi-u.5
for
100265692
ppo-u.5
for
7482382
ppo-u.5
for
7491063
mtr-u.5
for
11438450
ghi-r.1
for
107913610
ghi-r.1
for
107891187
bna-r.1
for
125583349
bna-r.1
for
125587865
bna-r.1
for
106447612
cit-r.1
for
102615727
osa-u.5
for
4342497
zma-u.5
for
103631988
tae-r.2
for
123188625
tae-r.2
for
123052790
tae-r.2
for
123044832
hvu-r.1
for
123426165
sbi-r.1
for
8060701
bdi-r.1
for
100824934
cre-r.1
for
CHLRE_04g214501v5


Ortholog ID: 7577
Species sot sly nta nta ath gma gma bra bra vvi ppo ppo mtr ghi ghi bna bna bna cit osa zma tae tae tae hvu sbi bdi cre
Symbol LOC102599047 LOC101245783 LOC107808053 LOC107782252 RIF10 LOC100819741 LOC100785430 LOC103859008 LOC103855181 LOC100265692 LOC7482382 LOC7491063 LOC11438450 LOC107913610 LOC107891187 LOC125587865 LOC106438964 LOC106418130 LOC102615727 LOC4342497 LOC103631988 LOC123188625 LOC123052790 LOC123044832 LOC123426165 LOC8060701 LOC100824934 CHLRE_04g214501v5
Function* probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic putative polyribonucleotide nucleotidyltransferase 1, chloroplastic putative polyribonucleotide nucleotidyltransferase 1, chloroplastic polyribonucleotide nucleotidyltransferase polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic polyribonucleotide nucleotidyltransferase 1, chloroplastic polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic polyribonucleotide nucleotidyltransferase 1, chloroplastic-like polyribonucleotide nucleotidyltransferase 1, chloroplastic-like polyribonucleotide nucleotidyltransferase 1, chloroplastic polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic probable polyribonucleotide nucleotidyltransferase 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot00230 Purine metabolism 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta04146 Peroxisome 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta04146 Peroxisome 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 4
ppo03010 Ribosome 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03060 Protein export 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae00970 Aminoacyl-tRNA biosynthesis 2
tae00270 Cysteine and methionine metabolism 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00230 Purine metabolism 2
cre01232 Nucleotide metabolism 2
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102599047 101245783 107808053 107782252 821181 100819741 100785430 103859008 103855181 100265692 7482382 7491063 11438450 107913610 107891187 125587865 106438964 106418130 102615727 4342497 103631988 123188625 123052790 123044832 123426165 8060701 100824934 5724232
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