Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102600981   transcription elongation factor SPT4 homolog 2-like 
 sly-u.5   101248963   transcription elongation factor SPT4 homolog 2-like 
 nta-r.1   107811012   transcription elongation factor SPT4 homolog 2-like 
 nta-r.1   107773283   transcription elongation factor SPT4 homolog 2 
 nta-r.1   107760371   transcription elongation factor SPT4 homolog 2 
 ath-u.5   AT5G08565   Transcription initiation Spt4-like protein 
 ath-u.5   SPT42   SPT4 homolog 2 
 gma-u.5   100306659   transcription elongation factor SPT4-like protein 
 gma-u.5   100812057   transcription elongation factor SPT4 homolog 1 
 bra-r.6   103855061   transcription elongation factor SPT4 homolog 2 
 vvi-u.5   100261013   transcription elongation factor SPT4 homolog 2 
 ppo-u.5   7454302   transcription elongation factor SPT4 homolog 2 
 ppo-u.5   7455510   transcription elongation factor SPT4 homolog 2 
 mtr-u.5   11430820   transcription elongation factor SPT4 homolog 2 
 mtr-u.5   11444230   transcription elongation factor SPT4 homolog 2 
 ghi-r.1   107949216   transcription elongation factor SPT4 homolog 2 
 ghi-r.1   107919552   transcription elongation factor SPT4 homolog 1 
 ghi-r.1   107898885   transcription elongation factor SPT4 homolog 2 
 bna-r.1   111204263   transcription elongation factor SPT4 homolog 1-like 
 bna-r.1   106382908   transcription elongation factor SPT4 homolog 2 
 bna-r.1   125604843   transcription elongation factor SPT4 homolog 2 
 cit-r.1   102612523   transcription elongation factor SPT4 homolog 2 
 osa-u.5   4343956   transcription elongation factor SPT4 homolog 1 
 zma-u.5   103633439   uncharacterized LOC103633439 
 zma-u.5   100284208   transcription elongation factor SPT4 
 tae-r.2   123044151   transcription elongation factor SPT4 homolog 1 
 tae-r.2   123187897   transcription elongation factor SPT4 homolog 1 
 tae-r.2   123052028   transcription elongation factor SPT4 homolog 1 
 hvu-r.1   123425238   transcription elongation factor SPT4 homolog 1-like 
 sbi-r.1   8079217   transcription elongation factor SPT4 homolog 1 
 bdi-r.1   100826631   transcription elongation factor SPT4 homolog 1 
 cre-r.1   CHLRE_02g116300v5   uncharacterized protein 

close


Top 50 coexpressed genes to 102600981 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 102600981 (sot-r.1 coexpression data)

CoexMap"102600981"


sotLOC102600981 | Entrez gene ID : 102600981      
Species sot sly nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 1 1 3 2 2 1 1 2 2 3 3 1 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot03250 [list] [network] Viral life cycle - HIV-1 (38 genes)
GO BP
GO:0140673 [list] [network] transcription elongation-coupled chromatin remodeling  (5 genes)  IEA  
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (22 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1516 genes)  IEA  
GO CC
GO:0032044 [list] [network] DSIF complex  (3 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2556 genes)  IEA  
GO MF
GO:0000993 [list] [network] RNA polymerase II complex binding  (16 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (768 genes)  IEA  
Protein XP_006360853.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  pero 2,  extr 1,  cyto_pero 1  (predict for XP_006360853.1)
Subcellular
localization
TargetP
mito 4,  other 3  (predict for XP_006360853.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102600981
sly-u.5
for
101248963
nta-r.1
for
107811012
nta-r.1
for
107773283
nta-r.1
for
107760371
ath-u.5
for
AT5G08565
ath-u.5
for
SPT42
gma-u.5
for
100306659
gma-u.5
for
100812057
bra-r.6
for
103855061
vvi-u.5
for
100261013
ppo-u.5
for
7454302
ppo-u.5
for
7455510
mtr-u.5
for
11430820
mtr-u.5
for
11444230
ghi-r.1
for
107949216
ghi-r.1
for
107919552
ghi-r.1
for
107898885
bna-r.1
for
111204263
bna-r.1
for
106382908
bna-r.1
for
125604843
cit-r.1
for
102612523
osa-u.5
for
4343956
zma-u.5
for
103633439
zma-u.5
for
100284208
tae-r.2
for
123044151
tae-r.2
for
123187897
tae-r.2
for
123052028
hvu-r.1
for
123425238
sbi-r.1
for
8079217
bdi-r.1
for
100826631
cre-r.1
for
CHLRE_02g116300v5


Ortholog ID: 5826
Species sot sly nta nta nta ath ath gma gma bra vvi ppo ppo mtr mtr ghi ghi ghi bna bna bna cit osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC102600981 LOC101248963 LOC107811012 LOC107773283 LOC107760371 AT5G08565 SPT42 LOC100306659 LOC100812057 LOC103855061 LOC100261013 LOC7454302 LOC7455510 LOC11430820 LOC11444230 LOC107949216 LOC107898885 LOC107894924 LOC106382908 LOC106405164 LOC106384955 LOC102612523 LOC4343956 LOC103633439 LOC100284208 LOC123044151 LOC123187897 LOC123052028 LOC123425238 LOC8079217 LOC100826631 CHLRE_02g116300v5
Function* transcription elongation factor SPT4 homolog 2-like transcription elongation factor SPT4 homolog 2-like transcription elongation factor SPT4 homolog 2-like transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 Transcription initiation Spt4-like protein SPT4 homolog 2 transcription elongation factor SPT4-like protein transcription elongation factor SPT4 homolog 1 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 1 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 1 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 1 uncharacterized LOC103633439 transcription elongation factor SPT4 transcription elongation factor SPT4 homolog 1 transcription elongation factor SPT4 homolog 1 transcription elongation factor SPT4 homolog 1 transcription elongation factor SPT4 homolog 1-like transcription elongation factor SPT4 homolog 1 transcription elongation factor SPT4 homolog 1 uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03420 Nucleotide excision repair 2
sot03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03060 Protein export 2
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta03250 Viral life cycle - HIV-1 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03250 Viral life cycle - HIV-1 2
ppo03040 Spliceosome 2
ppo04145 Phagosome 2
ppo04148 Efferocytosis 2
ppo04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
mtr03020 RNA polymerase 4
mtr03010 Ribosome 4
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi03250 Viral life cycle - HIV-1 2
ghi00480 Glutathione metabolism 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
ghi03250 Viral life cycle - HIV-1 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 7
bna03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 7
bna03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03420 Nucleotide excision repair 2
cit04120 Ubiquitin mediated proteolysis 2
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma04120 Ubiquitin mediated proteolysis 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102600981 101248963 107811012 107773283 107760371 830757 836487 100306659 100812057 103855061 100261013 7454302 7455510 11430820 11444230 107949216 107898885 107894924 106382908 106405164 106384955 102612523 4343956 103633439 100284208 123044151 123187897 123052028 123425238 8079217 100826631 5725425
The preparation time of this page was 0.1 [sec].