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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102601807   tRNA-splicing endonuclease subunit Sen2-1-like 
 sly-u.5   101260236   tRNA-splicing endonuclease subunit Sen2-1 
 ath-u.5   SEN1   splicing endonuclease 1 
 ath-u.5   SEN2   splicing endonuclease 2 
 gma-u.5   100810335   tRNA-splicing endonuclease subunit Sen2-1-like 
 gma-u.5   100807021   tRNA-splicing endonuclease subunit Sen2-1 
 vvi-u.5   100255233   tRNA-splicing endonuclease subunit Sen2-1 
 ppo-u.5   7472137   tRNA-splicing endonuclease subunit Sen2-2 
 mtr-u.5   11414349   tRNA-splicing endonuclease subunit Sen2-1 
 osa-u.5   4350867   probable tRNA-splicing endonuclease subunit Sen2 
 osa-u.5   4341203   probable tRNA-splicing endonuclease subunit Sen2 
 zma-u.5   100282606   tRNA-splicing endonuclease subunit Sen2 

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Top 50 coexpressed genes to 102601807 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102601807 (sot-r.1 coexpression data)

CoexMap"102601807"


sotLOC102601807 | Entrez gene ID : 102601807      
Species sot sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi tae bna ghi
Paralog 1 1 2 2 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000379 [list] [network] tRNA-type intron splice site recognition and cleavage  (4 genes)  IEA  
GO:0006388 [list] [network] tRNA splicing, via endonucleolytic cleavage and ligation  (7 genes)  IEA  
GO CC
GO:0000214 [list] [network] tRNA-intron endonuclease complex  (4 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4349 genes)  IEA  
GO MF
GO:0000213 [list] [network] tRNA-intron lyase activity  (2 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (3830 genes)  IEA  
Protein XP_006365739.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  chlo 1,  mito 1,  plas 1,  cysk 1,  chlo_mito 1,  cyto_pero 1,  cysk_plas 1,  mito_plas 1,  cyto_E.R. 1  (predict for XP_006365739.1)
Subcellular
localization
TargetP
other 4,  scret 3  (predict for XP_006365739.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102601807

.
sly-u.5
for
101260236

.
ath-u.5
for
SEN1

.
ath-u.5
for
SEN2

.
gma-u.5
for
100810335

.
gma-u.5
for
100807021

.
vvi-u.5
for
100255233

.
ppo-u.5
for
7472137

.
mtr-u.5
for
11414349

.
osa-u.5
for
4350867

.
osa-u.5
for
4341203

.
zma-u.5
for
100282606

.


Ortholog ID: 4924
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu hvu ghi ghi cre sbi sot sot cit bdi nta
Symbol SEN2 LOC100810335 LOC100807021 LOC101260236 LOC4350867 LOC100282606 LOC103856576 LOC100255233 LOC7472137 LOC11414349 LOC123060090 LOC123068570 LOC123410624 LOC123439335 LOC107954459 LOC107942887 CHLRE_02g096900v5 LOC110431285 LOC102601807 LOC102603151 LOC102624537 LOC100821766 LOC107830094
Function* splicing endonuclease 2 tRNA-splicing endonuclease subunit Sen2-1-like tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-1 probable tRNA-splicing endonuclease subunit Sen2 tRNA-splicing endonuclease subunit Sen2 tRNA-splicing endonuclease subunit Sen2-2 tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-2 tRNA-splicing endonuclease subunit Sen2-1 probable tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-1 uncharacterized protein probable tRNA-splicing endonuclease subunit Sen2 tRNA-splicing endonuclease subunit Sen2-1-like tRNA-splicing endonuclease subunit Sen2-1-like tRNA-splicing endonuclease subunit Sen2-1-like probable tRNA-splicing endonuclease subunit Sen2 tRNA-splicing endonuclease subunit Sen2-1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
zma00270 Cysteine and methionine metabolism 2
zma00670 One carbon pool by folate 2
zma03250 Viral life cycle - HIV-1 2
zma03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836145 100810335 100807021 101260236 4350867 100282606 103856576 100255233 7472137 11414349 123060090 123068570 123410624 123439335 107954459 107942887 5725603 110431285 102601807 102603151 102624537 100821766 107830094
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