ATTED-II : GeneCoexpression result

Species	Gene	Description
sot-r.1	102602934	reticulon-like protein B8
sly-u.5	101259405	reticulon-like protein B8
sly-u.5	101260015	reticulon-like protein B2
ath-u.5	AT2G46170	Reticulon family protein
ath-u.5	AT1G68230	Reticulon family protein
ath-u.5	RTNLB3	Reticulan like protein B3
gma-u.5	100306402	uncharacterized LOC100306402
gma-u.5	100796111	reticulon-like protein B5-like
gma-u.5	100809028	reticulon-like protein B9
vvi-u.5	100241363	reticulon-like protein B1
vvi-u.5	100267805	reticulon-like protein B8
vvi-u.5	100267262	reticulon-like protein B2
ppo-u.5	7458203	reticulon-like protein B1
ppo-u.5	7457367	reticulon-like protein B5
ppo-u.5	18105638	reticulon-like protein B1
mtr-u.5	120577351	reticulon-like protein B9
mtr-u.5	25485481	reticulon-like protein B14
osa-u.5	4342374	reticulon-like protein B8
zma-u.5	100283096	seed maturation protein
zma-u.5	100283279	dehydrin6
zma-u.5	100284105	seed maturation protein

Annotation

functional annotation

KEGG

GO BP

GO:0009617 [list] [network] response to bacterium

(27 genes)

IEA

GO CC

GO MF

Protein

XP_006366628.1 [sequence] [blastp]
XP_006366629.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, vacu 2, E.R. 2, nucl_plas 2, E.R._vacu 2, cysk_plas 2, mito_plas 2, cyto_plas 2	(predict for XP_006366628.1)
plas 4, vacu 3, E.R. 2, nucl_plas 2, cysk_plas 2, mito_plas 2, cyto_plas 2	(predict for XP_006366629.1)

Subcellular
localization
TargetP

other 8	(predict for XP_006366628.1)
other 6, chlo 5	(predict for XP_006366629.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102602934	sly-u.5 for 101259405	sly-u.5 for 101260015	ath-u.5 for AT2G46170	ath-u.5 for AT1G68230	ath-u.5 for RTNLB3	gma-u.5 for 100306402	gma-u.5 for 100796111	gma-u.5 for 100809028	vvi-u.5 for 100241363	vvi-u.5 for 100267805	vvi-u.5 for 100267262	ppo-u.5 for 7458203	ppo-u.5 for 7457367	ppo-u.5 for 18105638	mtr-u.5 for 120577351	mtr-u.5 for 25485481	osa-u.5 for 4342374	zma-u.5 for 100283096	zma-u.5 for 100283279	zma-u.5 for 100284105

Ortholog

Ortholog ID: 116

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

reticulon-like protein B9

reticulon-like protein B8

reticulon-like protein B9

reticulon-like protein B1

reticulon-like protein B8

Reticulon family protein

reticulon-like protein B5-like

reticulon-like protein B5

reticulon-like protein B8

reticulon-like protein B1

reticulon-like protein B5

reticulon-like protein B8

reticulon-like protein B3

reticulon-like protein B5

reticulon-like protein B2

reticulon-like protein B3

reticulon-like protein B1

reticulon-like protein B9

uncharacterized LOC100282693

Seed maturation protein

reticulon-like protein B1

reticulon-like protein B2

reticulon-like protein B1

reticulon-like protein B9

reticulon-like protein B4

reticulon-like protein B1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	8
sot04142	Lysosome	8
sot04145	Phagosome	7
sot00561	Glycerolipid metabolism	2
sot00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	2
sly04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	5
gma00270	Cysteine and methionine metabolism	4
gma01200	Carbon metabolism	4
gma00260	Glycine, serine and threonine metabolism	3
gma00750	Vitamin B6 metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
bra01230	Biosynthesis of amino acids	5
bra00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	4
ppo03050	Proteasome	3
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	4
ghi03460	Fanconi anemia pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
bna01240	Biosynthesis of cofactors	4
bna00330	Arginine and proline metabolism	2
bna00410	beta-Alanine metabolism	2
bna00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00330	Arginine and proline metabolism	2
bna00410	beta-Alanine metabolism	2
bna00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00592	alpha-Linolenic acid metabolism	3
cit03022	Basal transcription factors	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	2
cit04814	Motor proteins	2
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	3
osa00520	Amino sugar and nucleotide sugar metabolism	3
osa01250	Biosynthesis of nucleotide sugars	3
osa00061	Fatty acid biosynthesis	2
osa00780	Biotin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3
osa00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00040	Pentose and glucuronate interconversions	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00071	Fatty acid degradation	3
tae03083	Polycomb repressive complex	2
tae04120	Ubiquitin mediated proteolysis	2
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	5
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	2
sbi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00500	Starch and sucrose metabolism	2
cre00010	Glycolysis / Gluconeogenesis	2
cre00030	Pentose phosphate pathway	2
cre00051	Fructose and mannose metabolism	2
cre00052	Galactose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

102582810

102601510

101258243

101262660

107768346

819224

100793862

100779788

103870479

103847698

100267805

18105638

7457367

11436594

107896832

107890693

106450700

106450701

102609187

102620513

4326742

4325472

100282693

100191576

123141132

123161103

123407639

123443230

8074554

100837161

100846402

66053917

5724461

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 102602934 (sot-r.1 coexpression data)

Top 50 enrichment test to 102602934 (sot-r.1 coexpression data)


Species	sot	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	nta	cre	tae
Paralog	1	2	3	3	3	3	2	1	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102602934 (sot-r.1 coexpression data)

Top 50 enrichment test to 102602934 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**