ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cit-r.1	102608502	uncharacterized LOC102608502
ath-u.5	AT1G77800	PHD finger family protein
bra-r.6	103832208	uncharacterized LOC103832208
bra-r.6	103853101	uncharacterized LOC103853101
ghi-r.1	107918189	uncharacterized LOC107918189
ghi-r.1	107921987	uncharacterized LOC107921987
ghi-r.1	107925927	uncharacterized LOC107925927
bna-r.1	106415380	uncharacterized LOC106415380
bna-r.1	106400322	uncharacterized LOC106400322
bna-r.1	106412720	uncharacterized LOC106412720
gma-u.5	100777481	uncharacterized LOC100777481
gma-u.5	100775631	uncharacterized LOC100775631
vvi-u.5	100245365	uncharacterized LOC100245365
ppo-u.5	7460927	uncharacterized LOC7460927
ppo-u.5	18096224	uncharacterized LOC18096224
mtr-u.5	11412638	uncharacterized LOC11412638
mtr-u.5	25499992	uncharacterized LOC25499992
sly-u.5	101257427	uncharacterized LOC101257427
sot-r.1	102590292	uncharacterized LOC102590292
nta-r.1	107818515	uncharacterized LOC107818515
nta-r.1	107792434	uncharacterized LOC107792434
osa-u.5	107277268	uncharacterized LOC107277268
osa-u.5	4340450	uncharacterized LOC4340450
zma-u.5	103654224	uncharacterized LOC103654224
zma-u.5	103627799	PHD finger family protein
zma-u.5	100279001	uncharacterized LOC100279001
tae-r.2	123145672	uncharacterized LOC123145672
tae-r.2	123154035	uncharacterized LOC123154035
tae-r.2	123164422	uncharacterized LOC123164422
hvu-r.1	123402848	uncharacterized LOC123402848
hvu-r.1	123409909	uncharacterized LOC123409909
sbi-r.1	8078937	uncharacterized LOC8078937
sbi-r.1	8070752	uncharacterized LOC8070752
bdi-r.1	100828066	uncharacterized LOC100828066
bdi-r.1	100826983	uncharacterized LOC100826983

Top 50 coexpressed genes to 102608502 (cit-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102608502 (cit-r.1 coexpression data)

CoexMap"102608502"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(315 genes)

IEA

GO CC

GO MF

Protein

XP_006472699.2 [sequence] [blastp]
XP_024952536.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, mito 2, cyto_nucl 2, chlo 2, cysk_nucl 2, nucl_plas 2	(predict for XP_006472699.2)
nucl 4, chlo 3, mito 2, cyto_mito 1, cysk_nucl 1, nucl_plas 1	(predict for XP_024952536.2)

Subcellular
localization
TargetP

mito 9	(predict for XP_006472699.2)
mito 9	(predict for XP_024952536.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cit-r.1 for 102608502	ath-u.5 for AT1G77800	bra-r.6 for 103832208	bra-r.6 for 103853101	ghi-r.1 for 107918189	ghi-r.1 for 107921987	ghi-r.1 for 107925927	bna-r.1 for 106415380	bna-r.1 for 106400322	bna-r.1 for 106412720	gma-u.5 for 100777481	gma-u.5 for 100775631	vvi-u.5 for 100245365	ppo-u.5 for 7460927	ppo-u.5 for 18096224	mtr-u.5 for 11412638	mtr-u.5 for 25499992	sly-u.5 for 101257427	sot-r.1 for 102590292	nta-r.1 for 107818515	nta-r.1 for 107792434	osa-u.5 for 107277268	osa-u.5 for 4340450	zma-u.5 for 103654224	zma-u.5 for 103627799	zma-u.5 for 100279001	tae-r.2 for 123145672	tae-r.2 for 123154035	tae-r.2 for 123164422	hvu-r.1 for 123402848	hvu-r.1 for 123409909	sbi-r.1 for 8078937	sbi-r.1 for 8070752	bdi-r.1 for 100828066	bdi-r.1 for 100826983

Ortholog

Ortholog ID: 4833

Species

cit

ath

bra

ghi

bna

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC102608502

PHD finger family protein

uncharacterized LOC103832208

uncharacterized LOC103853101

uncharacterized LOC107918189

uncharacterized LOC107921987

uncharacterized LOC107962480

uncharacterized LOC106415380

uncharacterized LOC106400322

uncharacterized LOC106354594

uncharacterized LOC100777481

uncharacterized LOC100775631

uncharacterized LOC100245365

uncharacterized LOC7460927

uncharacterized LOC18096224

uncharacterized LOC11412638

uncharacterized LOC25499992

uncharacterized LOC101257427

uncharacterized LOC102590292

uncharacterized LOC107818515

uncharacterized LOC107792434

uncharacterized LOC107277268

uncharacterized LOC4340450

uncharacterized LOC103654224

PHD finger family protein

uncharacterized LOC109942930

uncharacterized LOC123154035

uncharacterized LOC123164422

uncharacterized LOC123138420

uncharacterized LOC123402848

uncharacterized LOC123409909

uncharacterized LOC8078937

uncharacterized LOC8070752

uncharacterized LOC100828066

uncharacterized LOC100826983

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2
ath03083	Polycomb repressive complex	2
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	3
bra03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00310	Lysine degradation	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00310	Lysine degradation	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03420	Nucleotide excision repair	2
bna00562	Inositol phosphate metabolism	2
bna04070	Phosphatidylinositol signaling system	2
bna04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03420	Nucleotide excision repair	2
bna00562	Inositol phosphate metabolism	2
bna04070	Phosphatidylinositol signaling system	2
bna04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03420	Nucleotide excision repair	2
bna00562	Inositol phosphate metabolism	2
bna04070	Phosphatidylinositol signaling system	2
bna04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00310	Lysine degradation	4
gma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00310	Lysine degradation	4
gma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3
zma03015	mRNA surveillance pathway	3
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	2
tae04120	Ubiquitin mediated proteolysis	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00310	Lysine degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03083	Polycomb repressive complex	3
hvu03013	Nucleocytoplasmic transport	2
hvu03250	Viral life cycle - HIV-1	2
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	3
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	4
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	4
bdi03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

102608502

844117

103832208

103853101

107918189

107921987

107962480

106415380

106400322

106354594

100777481

100775631

100245365

7460927

18096224

11412638

25499992

101257427

102590292

107818515

107792434

107277268

4340450

103654224

103627799

109942930

123154035

123164422

123138420

123402848

123409909

8078937

8070752

100828066

100826983

The preparation time of this page was 0.1 [sec].


Species	cit	ath	bra	ghi	bna	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	1	1	2	3	3	2	1	2	2	1	1	2	2	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102608502 (cit-r.1 coexpression data)

Top 50 enrichment test to 102608502 (cit-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**