ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cit-r.1	102609768	uncharacterized LOC102609768
ath-u.5	AT3G09100	mRNA capping enzyme family protein
ath-u.5	AT5G01290	mRNA capping enzyme family protein
gma-u.5	100776633	mRNA-capping enzyme
gma-u.5	100778292	mRNA-capping enzyme
gma-u.5	100793183	mRNA-capping enzyme
vvi-u.5	100256199	mRNA capping enzyme-like
ppo-u.5	18106297	uncharacterized LOC18106297
ppo-u.5	18100001	uncharacterized LOC18100001
mtr-u.5	112416516	mRNA-capping enzyme
mtr-u.5	11416372	mRNA-capping enzyme
mtr-u.5	25498713	mRNA-capping enzyme
sly-u.5	101261575	uncharacterized LOC101261575
sly-u.5	101258480	uncharacterized LOC101258480
osa-u.5	4350086	uncharacterized LOC4350086
osa-u.5	4351709	uncharacterized LOC4351709
zma-u.5	103646942	mRNA-capping enzyme
zma-u.5	100193119	uncharacterized LOC100193119

Top 50 coexpressed genes to 102609768 (cit-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102609768 (cit-r.1 coexpression data)

CoexMap"102609768"

[Cytoscape]

Annotation

functional annotation

KEGG

cit03015 [list] [network] mRNA surveillance pathway (106 genes)

GO BP

GO:0006370 [list] [network] 7-methylguanosine mRNA capping	(3 genes)	IEA
GO:0006470 [list] [network] protein dephosphorylation	(99 genes)	IEA
GO:0006310 [list] [network] DNA recombination	(132 genes)	IEA
GO:0006281 [list] [network] DNA repair	(225 genes)	IEA

GO CC

GO MF

GO:0004484 [list] [network] mRNA guanylyltransferase activity	(1 genes)	IEA
GO:0140818 [list] [network] mRNA 5'-triphosphate monophosphatase activity	(1 genes)	IEA
GO:0003910 [list] [network] DNA ligase (ATP) activity	(5 genes)	IEA
GO:0008138 [list] [network] protein tyrosine/serine/threonine phosphatase activity	(15 genes)	IEA
GO:0005524 [list] [network] ATP binding	(1864 genes)	IEA

Protein

XP_006480954.1 [sequence] [blastp]
XP_006480955.1 [sequence] [blastp]
XP_006480956.1 [sequence] [blastp]
XP_052299284.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 1, plas 1, cysk 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1	(predict for XP_006480954.1)
nucl 7, cyto 1, plas 1, cysk 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1	(predict for XP_006480955.1)
nucl 7, cyto 1, plas 1, cysk 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1	(predict for XP_006480956.1)
nucl 7, cyto 1, plas 1, cysk 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1	(predict for XP_052299284.1)

Subcellular
localization
TargetP

other 9	(predict for XP_006480954.1)
other 9	(predict for XP_006480955.1)
other 9	(predict for XP_006480956.1)
other 9	(predict for XP_052299284.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cit-r.1 for 102609768 .	ath-u.5 for AT3G09100 .	ath-u.5 for AT5G01290 .	gma-u.5 for 100776633 .	gma-u.5 for 100778292 .	gma-u.5 for 100793183 .	vvi-u.5 for 100256199 .	ppo-u.5 for 18106297 .	ppo-u.5 for 18100001 .	mtr-u.5 for 112416516 .	mtr-u.5 for 11416372 .	mtr-u.5 for 25498713 .	sly-u.5 for 101261575 .	sly-u.5 for 101258480 .	osa-u.5 for 4350086 .	osa-u.5 for 4351709 .	zma-u.5 for 103646942 .	zma-u.5 for 100193119 .

Ortholog

Ortholog ID: 2900

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

Function^*

mRNA capping enzyme family protein

mRNA-capping enzyme

uncharacterized LOC101261575

uncharacterized LOC101258480

uncharacterized LOC4350086

uncharacterized LOC4351709

uncharacterized LOC100193119

mRNA-capping enzyme

mRNA-capping enzyme-like

mRNA capping enzyme-like

uncharacterized LOC18100001

uncharacterized LOC18106297

mRNA-capping enzyme

mRNA-capping enzyme-like

mRNA-capping enzyme

uncharacterized protein

mRNA-capping enzyme

mRNA-capping enzyme-like

uncharacterized LOC102609768

mRNA-capping enzyme

uncharacterized LOC107818261

uncharacterized LOC107816729

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2
ath03040	Spliceosome	2
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	3
gma03082	ATP-dependent chromatin remodeling	3
gma03015	mRNA surveillance pathway	2
gma04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	4
bra03015	mRNA surveillance pathway	3
bra04120	Ubiquitin mediated proteolysis	3
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	4
bra03040	Spliceosome	2
bra04120	Ubiquitin mediated proteolysis	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	4
ppo03015	mRNA surveillance pathway	2
ppo03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	4
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03022	Basal transcription factors	3
mtr03420	Nucleotide excision repair	3
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	4
mtr03083	Polycomb repressive complex	3
mtr03015	mRNA surveillance pathway	3
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	7
tae03013	Nucleocytoplasmic transport	4
tae04141	Protein processing in endoplasmic reticulum	3
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	3
hvu04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03060	Protein export	3
bna04141	Protein processing in endoplasmic reticulum	3
bna04016	MAPK signaling pathway - plant	2
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2
bna03015	mRNA surveillance pathway	2
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01200	Carbon metabolism	4
cre03015	mRNA surveillance pathway	2
cre00010	Glycolysis / Gluconeogenesis	2
cre00030	Pentose phosphate pathway	2
cre00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	5
nta03013	Nucleocytoplasmic transport	3
nta03040	Spliceosome	3
nta00510	N-Glycan biosynthesis	2
nta00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	3
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

831240

820064

100803597

100778292

101261575

101258480

4350086

4351709

100193119

103646942

117131528

117131533

100256199

18100001

18106297

112416516

11416372

123187213

123096366

123424528

123447875

107958035

107948869

106433828

111215797

5719933

66057357

8071691

102584702

102600386

102609768

100825234

100840366

107818261

107816729

The preparation time of this page was 0.5 [sec].


Species	cit	ath	gma	vvi	ppo	mtr	sly	osa	zma	cre	ghi	hvu	bdi	sot	bra	sbi	tae	nta	bna
Paralog	1	2	3	1	2	3	2	2	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102609768 (cit-r.1 coexpression data)

Top 50 enrichment test to 102609768 (cit-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**