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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102611329   phosphomethylpyrimidine synthase, chloroplastic 
 ath-u.5   THIC   thiaminC 
 gma-u.5   100787350   phosphomethylpyrimidine synthase, chloroplastic 
 gma-u.5   100786478   phosphomethylpyrimidine synthase, chloroplastic 
 vvi-u.5   100250096   phosphomethylpyrimidine synthase, chloroplastic 
 ppo-u.5   7468579   phosphomethylpyrimidine synthase, chloroplastic 
 ppo-u.5   18095058   phosphomethylpyrimidine synthase, chloroplastic 
 mtr-u.5   25490814   phosphomethylpyrimidine synthase, chloroplastic 
 mtr-u.5   25490810   phosphomethylpyrimidine synthase, chloroplastic 
 sly-u.5   THIC   thiamine biosynthesis protein ThiC 
 osa-u.5   4333719   phosphomethylpyrimidine synthase, chloroplastic 
 zma-u.5   100285440   uncharacterized LOC100285440 

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Top 50 coexpressed genes to 102611329 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102611329 (cit-r.1 coexpression data)

CoexMap"102611329"


citLOC102611329 | Entrez gene ID : 102611329      
Species cit ath gma vvi ppo mtr sly osa zma hvu bna bra ghi sbi bdi nta tae cre sot
Paralog 1 1 2 1 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009228 [list] [network] thiamine biosynthetic process  (5 genes)  IEA  
GO:0006508 [list] [network] proteolysis  (701 genes)  IEA  
GO CC
GO:0009534 [list] [network] chloroplast thylakoid  (102 genes)  IEA  
GO:0016020 [list] [network] membrane  (2752 genes)  IEA  
GO MF
GO:0004176 [list] [network] ATP-dependent peptidase activity  (32 genes)  IEA  
GO:0004222 [list] [network] metalloendopeptidase activity  (50 genes)  IEA  
GO:0016830 [list] [network] carbon-carbon lyase activity  (73 genes)  IEA  
GO:0051536 [list] [network] iron-sulfur cluster binding  (81 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (454 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (771 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1864 genes)  IEA  
Protein XP_006488484.1 [sequence] [blastp]
XP_015388854.2 [sequence] [blastp]
XP_024957496.2 [sequence] [blastp]
XP_024957497.2 [sequence] [blastp]
XP_024957498.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  chlo 4,  mito 1  (predict for XP_006488484.1)
chlo 4,  nucl 2,  extr 1,  mito 1,  cyto_nucl 1,  cysk_nucl 1,  mito_plas 1  (predict for XP_015388854.2)
chlo 4,  nucl 2,  extr 1,  mito 1,  cyto_nucl 1,  cysk_nucl 1,  mito_plas 1  (predict for XP_024957496.2)
chlo 4,  nucl 2,  extr 1,  mito 1,  cyto_nucl 1,  cysk_nucl 1,  mito_plas 1  (predict for XP_024957497.2)
plas 7,  chlo 1,  mito 1,  E.R. 1,  pero 1,  chlo_mito 1  (predict for XP_024957498.2)
Subcellular
localization
TargetP
mito 4  (predict for XP_006488484.1)
chlo 6  (predict for XP_015388854.2)
chlo 6  (predict for XP_024957496.2)
chlo 6  (predict for XP_024957497.2)
mito 4  (predict for XP_024957498.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102611329
ath-u.5
for
THIC
gma-u.5
for
100787350
gma-u.5
for
100786478
vvi-u.5
for
100250096
ppo-u.5
for
7468579
ppo-u.5
for
18095058
mtr-u.5
for
25490814
mtr-u.5
for
25490810
sly-u.5
for
THIC
osa-u.5
for
4333719
zma-u.5
for
100285440


Ortholog ID: 8403
Species cit ath bra ghi ghi bna bna gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC102611329 THIC LOC103868019 LOC121202913 LOC121202937 LOC106451517 LOC106451520 LOC100786478 LOC100787350 LOC100250096 LOC7468579 LOC18095058 LOC25490810 LOC25490814 THIC LOC102594417 LOC107782237 LOC107810498 LOC4333719 LOC100285440 LOC123095671 LOC123087299 LOC123447067 LOC8056723 LOC100843013 CHLRE_05g240850v5
Function* phosphomethylpyrimidine synthase, chloroplastic thiaminC phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic thiamine biosynthesis protein ThiC phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic uncharacterized LOC100285440 phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic phosphomethylpyrimidine synthase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 5
ath01240 Biosynthesis of cofactors 3
ath00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00730 Thiamine metabolism 4
bra01240 Biosynthesis of cofactors 4
bra00500 Starch and sucrose metabolism 4
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 8
bna00730 Thiamine metabolism 3
bna01240 Biosynthesis of cofactors 3
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
bna00730 Thiamine metabolism 3
bna01240 Biosynthesis of cofactors 3
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00730 Thiamine metabolism 6
gma01240 Biosynthesis of cofactors 6
gma00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00730 Thiamine metabolism 6
gma01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 5
vvi00730 Thiamine metabolism 3
vvi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 4
ppo03010 Ribosome 2
ppo00730 Thiamine metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 4
ppo00195 Photosynthesis 3
ppo01240 Biosynthesis of cofactors 3
ppo00730 Thiamine metabolism 2
ppo00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00730 Thiamine metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 2
mtr00730 Thiamine metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
sly00730 Thiamine metabolism 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 6
sot00520 Amino sugar and nucleotide sugar metabolism 3
sot01250 Biosynthesis of nucleotide sugars 3
sot00730 Thiamine metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta04142 Lysosome 2
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 5
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 3
osa00730 Thiamine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 4
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 6
tae01240 Biosynthesis of cofactors 6
tae04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 6
tae01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00730 Thiamine metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00730 Thiamine metabolism 3
sbi01240 Biosynthesis of cofactors 3
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 3
cre00730 Thiamine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102611329 817513 103868019 121202913 121202937 106451517 106451520 100786478 100787350 100250096 7468579 18095058 25490810 25490814 101264726 102594417 107782237 107810498 4333719 100285440 123095671 123087299 123447067 8056723 100843013 5723262
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