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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102611973   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 ath-u.5   EMB3141   Pentatricopeptide repeat (PPR-like) superfamily protein 
 bra-r.6   103833090   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 ghi-r.1   121211073   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 ghi-r.1   107913420   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 bna-r.1   106353939   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 bna-r.1   106366386   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 gma-u.5   100788188   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 gma-u.5   100784842   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 vvi-u.5   100257575   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 ppo-u.5   7454710   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 mtr-u.5   25488604   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 sly-u.5   101248795   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 nta-r.1   107780902   pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like 
 osa-u.5   4344628   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 zma-u.5   103653105   uncharacterized LOC103653105 
 tae-r.2   123164632   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 tae-r.2   123147428   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 hvu-r.1   123407099   pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like 
 sbi-r.1   8076537   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 
 sbi-r.1   110437386   pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like 
 bdi-r.1   100839922   pentatricopeptide repeat-containing protein At5g50390, chloroplastic 

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Top 50 coexpressed genes to 102611973 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102611973 (cit-r.1 coexpression data)

CoexMap"102611973"


citLOC102611973 | Entrez gene ID : 102611973    
Species cit ath bra ghi bna gma vvi ppo mtr sly nta osa zma tae hvu sbi bdi sot cre
Paralog 1 1 1 2 2 2 1 1 1 1 1 1 1 2 1 2 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (369 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (771 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_052294046.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 2,  chlo 1,  vacu 1,  pero 1,  golg 1  (predict for XP_052294046.1)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for XP_052294046.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102611973
ath-u.5
for
EMB3141
bra-r.6
for
103833090
ghi-r.1
for
121211073
ghi-r.1
for
107913420
bna-r.1
for
106353939
bna-r.1
for
106366386
gma-u.5
for
100788188
gma-u.5
for
100784842
vvi-u.5
for
100257575
ppo-u.5
for
7454710
mtr-u.5
for
25488604
sly-u.5
for
101248795
nta-r.1
for
107780902
osa-u.5
for
4344628
zma-u.5
for
103653105
tae-r.2
for
123164632
tae-r.2
for
123147428
hvu-r.1
for
123407099
sbi-r.1
for
8076537
sbi-r.1
for
110437386
bdi-r.1
for
100839922


Ortholog ID: 10989
Species cit ath bra ghi ghi bna bna gma gma vvi ppo mtr sly nta osa zma tae tae hvu sbi sbi bdi
Symbol LOC102611973 EMB3141 LOC103833090 LOC121211073 LOC107913420 LOC106353939 LOC106366386 LOC100788188 LOC100784842 LOC100257575 LOC7454710 LOC25488604 LOC101248795 LOC107780902 LOC4344628 LOC103653105 LOC123164632 LOC123147428 LOC123407099 LOC8076537 LOC110437386 LOC100839922
Function* pentatricopeptide repeat-containing protein At5g50390, chloroplastic Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like pentatricopeptide repeat-containing protein At5g50390, chloroplastic uncharacterized LOC103653105 pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like pentatricopeptide repeat-containing protein At5g50390, chloroplastic pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like pentatricopeptide repeat-containing protein At5g50390, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00620 Pyruvate metabolism 8
ath01200 Carbon metabolism 8
ath00010 Glycolysis / Gluconeogenesis 5
ath00785 Lipoic acid metabolism 5
ath00061 Fatty acid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 14
bna01200 Carbon metabolism 14
bna00010 Glycolysis / Gluconeogenesis 8
bna00640 Propanoate metabolism 8
bna00061 Fatty acid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 14
bna01200 Carbon metabolism 14
bna00010 Glycolysis / Gluconeogenesis 8
bna00640 Propanoate metabolism 8
bna00061 Fatty acid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00785 Lipoic acid metabolism 4
ppo01240 Biosynthesis of cofactors 4
ppo00620 Pyruvate metabolism 3
ppo01200 Carbon metabolism 3
ppo00061 Fatty acid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00062 Fatty acid elongation 3
mtr01040 Biosynthesis of unsaturated fatty acids 2
mtr01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00620 Pyruvate metabolism 8
sly01200 Carbon metabolism 8
sly00785 Lipoic acid metabolism 7
sly00010 Glycolysis / Gluconeogenesis 6
sly00020 Citrate cycle (TCA cycle) 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03430 Mismatch repair 4
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03430 Mismatch repair 4
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102611973 835107 103833090 121211073 107913420 106353939 106366386 100788188 100784842 100257575 7454710 25488604 101248795 107780902 4344628 103653105 123164632 123147428 123407099 8076537 110437386 100839922
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