ATTED-II : GeneCoexpression result

Species	Gene	Description
cit-r.1	102613458	uncharacterized LOC102613458
ath-u.5	AT3G18940	clast3-like protein
bra-r.6	103859780	proteasome assembly chaperone 2
bra-r.6	103869510	proteasome assembly chaperone 2
ghi-r.1	107938847	proteasome assembly chaperone 2
ghi-r.1	107908569	proteasome assembly chaperone 2
bna-r.1	125608956	proteasome assembly chaperone 2-like
bna-r.1	106381235	proteasome assembly chaperone 2
bna-r.1	106444103	proteasome assembly chaperone 2
gma-u.5	100812348	proteasome assembly chaperone 2
gma-u.5	100799566	proteasome assembly chaperone 2
vvi-u.5	100243552	uncharacterized LOC100243552
ppo-u.5	112327304	uncharacterized LOC112327304
ppo-u.5	7461186	uncharacterized LOC7461186
mtr-u.5	25492682	proteasome assembly chaperone 2
sly-u.5	101258795	uncharacterized LOC101258795
nta-r.1	107778217	uncharacterized LOC107778217
nta-r.1	107808155	uncharacterized LOC107808155
osa-u.5	4334232	uncharacterized LOC4334232
zma-u.5	100194052	uncharacterized LOC100194052
tae-r.2	123105144	proteasome assembly chaperone 2
tae-r.2	123113436	proteasome assembly chaperone 2
tae-r.2	123122954	proteasome assembly chaperone 2
hvu-r.1	123452393	proteasome assembly chaperone 2
sbi-r.1	8083969	proteasome assembly chaperone 2
bdi-r.1	100830359	proteasome assembly chaperone 2
cre-r.1	CHLRE_09g399589v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0043248 [list] [network] proteasome assembly

(9 genes)

IEA

GO CC

GO:0005829 [list] [network] cytosol	(791 genes)	IEA
GO:0005634 [list] [network] nucleus	(2569 genes)	IEA

GO MF

Protein

XP_006479348.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, nucl 2, cyto 1, mito 1, pero 1, golg 1, cyto_pero 1

(predict for XP_006479348.2)

Subcellular
localization
TargetP

other 7, scret 3

(predict for XP_006479348.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cit-r.1 for 102613458	ath-u.5 for AT3G18940	bra-r.6 for 103859780	bra-r.6 for 103869510	ghi-r.1 for 107938847	ghi-r.1 for 107908569	bna-r.1 for 125608956	bna-r.1 for 106381235	bna-r.1 for 106444103	gma-u.5 for 100812348	gma-u.5 for 100799566	vvi-u.5 for 100243552	ppo-u.5 for 112327304	ppo-u.5 for 7461186	mtr-u.5 for 25492682	sly-u.5 for 101258795	nta-r.1 for 107778217	nta-r.1 for 107808155	osa-u.5 for 4334232	zma-u.5 for 100194052	tae-r.2 for 123105144	tae-r.2 for 123113436	tae-r.2 for 123122954	hvu-r.1 for 123452393	sbi-r.1 for 8083969	bdi-r.1 for 100830359	cre-r.1 for CHLRE_09g399589v5

Ortholog

Ortholog ID: 7221

Species

cit

ath

bra

ghi

bna

gma

vvi

ppo

mtr

sly

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC102613458

clast3-like protein

proteasome assembly chaperone 2

uncharacterized LOC100243552

uncharacterized LOC112327304

uncharacterized LOC7461186

proteasome assembly chaperone 2

uncharacterized LOC101258795

uncharacterized LOC107778217

uncharacterized LOC107808155

uncharacterized LOC4334232

uncharacterized LOC100194052

proteasome assembly chaperone 2

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	7
cit03008	Ribosome biogenesis in eukaryotes	4
cit04141	Protein processing in endoplasmic reticulum	2
cit03013	Nucleocytoplasmic transport	2
cit03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	5
bra03410	Base excision repair	2
bra03420	Nucleotide excision repair	2
bra03430	Mismatch repair	2
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	13
bra00010	Glycolysis / Gluconeogenesis	3
bra00710	Carbon fixation by Calvin cycle	3
bra01200	Carbon metabolism	3
bra01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	8
nta00010	Glycolysis / Gluconeogenesis	2
nta00071	Fatty acid degradation	2
nta00350	Tyrosine metabolism	2
nta00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01200	Carbon metabolism	4
nta03050	Proteasome	2
nta00010	Glycolysis / Gluconeogenesis	2
nta00071	Fatty acid degradation	2
nta00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	14
osa04141	Protein processing in endoplasmic reticulum	4
osa00510	N-Glycan biosynthesis	2
osa00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	11
zma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	8
tae00900	Terpenoid backbone biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	7
tae00071	Fatty acid degradation	4
tae00280	Valine, leucine and isoleucine degradation	4
tae00310	Lysine degradation	4
tae00380	Tryptophan metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2
hvu03013	Nucleocytoplasmic transport	2
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	4
sbi03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	5
bdi03013	Nucleocytoplasmic transport	4
bdi03015	mRNA surveillance pathway	4
bdi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	5

Expression

Expression pattern

Entrez Gene ID^*

102613458

821426

103859780

103869510

107938847

107908569

106381235

106444103

106446853

100812348

100799566

100243552

112327304

7461186

25492682

101258795

107778217

107808155

4334232

100194052

123105144

123113436

123122954

123452393

8083969

100830359

5720400

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 102613458 (cit-r.1 coexpression data)

Top 50 enrichment test to 102613458 (cit-r.1 coexpression data)


Species	cit	ath	bra	ghi	bna	gma	vvi	ppo	mtr	sly	nta	osa	zma	tae	hvu	sbi	bdi	cre	sot
Paralog	1	1	2	2	3	2	1	2	1	1	2	1	1	3	1	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102613458 (cit-r.1 coexpression data)

Top 50 enrichment test to 102613458 (cit-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**