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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102616396   pentatricopeptide repeat-containing protein At4g13650 
 ath-u.5   AT4G13650   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100788946   pentatricopeptide repeat-containing protein At4g13650 
 gma-u.5   100776269   pentatricopeptide repeat-containing protein At4g13650-like 
 vvi-u.5   100246875   NADPH-dependent aldehyde reductase-like protein, chloroplastic 
 ppo-u.5   7482355   pentatricopeptide repeat-containing protein At4g13650 
 mtr-u.5   25495868   pentatricopeptide repeat-containing protein At4g13650 
 sly-u.5   101266794   pentatricopeptide repeat-containing protein At4g13650 
 osa-u.5   4352470   pentatricopeptide repeat-containing protein 
 zma-u.5   109943998   pentatricopeptide repeat-containing protein At4g13650 
 zma-u.5   103646503   pentatricopeptide repeat-containing protein At4g13650 
 zma-u.5   100274763   pentatricopeptide repeat-containing protein At4g13650 

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Top 50 coexpressed genes to 102616396 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102616396 (cit-r.1 coexpression data)

CoexMap"102616396"


citLOC102616396 | Entrez gene ID : 102616396    
Species cit ath gma vvi ppo mtr sly osa zma bdi hvu bra bna sbi ghi sot nta cre tae
Paralog 1 1 2 1 1 1 1 1 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (369 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (4772 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (771 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_006479096.2 [sequence] [blastp]
XP_015386170.2 [sequence] [blastp]
XP_015386171.2 [sequence] [blastp]
XP_024954392.2 [sequence] [blastp]
XP_052293911.1 [sequence] [blastp]
XP_052293912.1 [sequence] [blastp]
XP_052293913.1 [sequence] [blastp]
XP_052293915.1 [sequence] [blastp]
XP_052293916.1 [sequence] [blastp]
XP_052293917.1 [sequence] [blastp]
XP_052293918.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_006479096.2)
chlo 6,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_015386170.2)
chlo 6,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_015386171.2)
chlo 6,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_024954392.2)
chlo 6,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_052293911.1)
chlo 6,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_052293912.1)
chlo 6,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_052293913.1)
chlo 6,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_052293915.1)
chlo 6,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_052293916.1)
chlo 6,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_052293917.1)
chlo 6,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_052293918.1)
Subcellular
localization
TargetP
chlo 4  (predict for XP_006479096.2)
chlo 4  (predict for XP_015386170.2)
chlo 4  (predict for XP_015386171.2)
chlo 4  (predict for XP_024954392.2)
chlo 4  (predict for XP_052293911.1)
chlo 4  (predict for XP_052293912.1)
chlo 4  (predict for XP_052293913.1)
chlo 4  (predict for XP_052293915.1)
chlo 4  (predict for XP_052293916.1)
chlo 4  (predict for XP_052293917.1)
chlo 4  (predict for XP_052293918.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102616396
ath-u.5
for
AT4G13650
gma-u.5
for
100788946
gma-u.5
for
100776269
vvi-u.5
for
100246875
ppo-u.5
for
7482355
mtr-u.5
for
25495868
sly-u.5
for
101266794
osa-u.5
for
4352470
zma-u.5
for
109943998
zma-u.5
for
103646503
zma-u.5
for
100274763


Ortholog ID: 9570
Species cit ath bra ghi ghi bna bna gma gma vvi ppo mtr sly sot nta nta osa zma zma hvu bdi
Symbol LOC102616396 AT4G13650 LOC103863612 LOC107888460 LOC107942851 LOC106426942 LOC106388405 LOC100776269 LOC100788946 LOC100246875 LOC7482355 LOC25495868 LOC101266794 LOC102598486 LOC107765897 LOC107800457 LOC4352470 LOC103646503 LOC100274763 LOC123396014 LOC100831842
Function* pentatricopeptide repeat-containing protein At4g13650 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At4g13650-like pentatricopeptide repeat-containing protein At4g13650 NADPH-dependent aldehyde reductase-like protein, chloroplastic pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At4g13650-like pentatricopeptide repeat-containing protein At4g13650-like pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At4g13650 pentatricopeptide repeat-containing protein At4g13650
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 3
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi03018 RNA degradation 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00480 Glutathione metabolism 3
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00240 Pyrimidine metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102616396 826999 103863612 107888460 107942851 106426942 106388405 100776269 100788946 100246875 7482355 25495868 101266794 102598486 107765897 107800457 4352470 103646503 100274763 123396014 100831842
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