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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102616539   E3 ubiquitin-protein ligase RHA2A 
 ath-u.5   RHA2B   RING-H2 finger protein 2B 
 ath-u.5   RHA2A   RING-H2 finger A2A 
 bra-r.6   103827603   E3 ubiquitin-protein ligase RHA2B 
 bra-r.6   103832774   E3 ubiquitin-protein ligase RHA2B 
 bra-r.6   103872299   E3 ubiquitin-protein ligase RHA2A 
 ghi-r.1   107950384   probable E3 ubiquitin-protein ligase XERICO 
 ghi-r.1   107959984   E3 ubiquitin-protein ligase RHA2A 
 ghi-r.1   107951671   E3 ubiquitin-protein ligase RHA2B 
 bna-r.1   106378980   E3 ubiquitin-protein ligase RHA2B-like 
 bna-r.1   106415916   E3 ubiquitin-protein ligase RHA2A 
 bna-r.1   106349441   E3 ubiquitin-protein ligase RHA2B 
 gma-u.5   100797628   E3 ubiquitin-protein ligase RHA2A 
 gma-u.5   100803789   E3 ubiquitin-protein ligase RHA2A 
 vvi-u.5   104879925   probable E3 ubiquitin-protein ligase XERICO 
 vvi-u.5   100262985   E3 ubiquitin-protein ligase RHA2A 
 ppo-u.5   7482861   E3 ubiquitin-protein ligase RHA2A 
 ppo-u.5   7475555   E3 ubiquitin-protein ligase RHA2A 
 ppo-u.5   18099148   RING-H2 finger protein ATL72 
 mtr-u.5   25485456   E3 ubiquitin-protein ligase RHA2A 
 sly-u.5   101266940   E3 ubiquitin-protein ligase RHA2A 
 sly-u.5   101246418   probable E3 ubiquitin-protein ligase XERICO 
 sot-r.1   102586342   E3 ubiquitin-protein ligase RHA2A 
 sot-r.1   102581773   probable E3 ubiquitin-protein ligase RHA2B 
 sot-r.1   102594525   E3 ubiquitin-protein ligase RHA2A 
 nta-r.1   107786351   uncharacterized LOC107786351 
 nta-r.1   107812622   E3 ubiquitin-protein ligase RHA2A-like 
 nta-r.1   107785175   E3 ubiquitin-protein ligase RHA2A-like 
 osa-u.5   4335292   receptor homology region, transmembrane domain- and RING domain-containing protein 6 
 zma-u.5   100281639   uncharacterized LOC100281639 
 hvu-r.1   123429271   RING-H2 finger protein ATL64-like 
 sbi-r.1   8085843   E3 ubiquitin-protein ligase RHA2A 
 bdi-r.1   100825269   E3 ubiquitin-protein ligase MPSR1 

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Top 50 coexpressed genes to 102616539 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102616539 (cit-r.1 coexpression data)

CoexMap"102616539"


citLOC102616539 | Entrez gene ID : 102616539    
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta osa zma hvu sbi bdi cre tae
Paralog 1 2 3 3 3 2 2 3 1 2 3 3 1 1 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (265 genes)  IEA  
GO CC
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (137 genes)  IEA  
Protein XP_006468778.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  E.R. 2,  chlo_mito 2,  nucl 1,  cyto 1,  cyto_nucl 1,  E.R._vacu 1  (predict for XP_006468778.1)
Subcellular
localization
TargetP
scret 6  (predict for XP_006468778.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102616539
ath-u.5
for
RHA2B
ath-u.5
for
RHA2A
bra-r.6
for
103827603
bra-r.6
for
103832774
bra-r.6
for
103872299
ghi-r.1
for
107950384
ghi-r.1
for
107959984
ghi-r.1
for
107951671
bna-r.1
for
106378980
bna-r.1
for
106415916
bna-r.1
for
106349441
gma-u.5
for
100797628
gma-u.5
for
100803789
vvi-u.5
for
104879925
vvi-u.5
for
100262985
ppo-u.5
for
7482861
ppo-u.5
for
7475555
ppo-u.5
for
18099148
mtr-u.5
for
25485456
sly-u.5
for
101266940
sly-u.5
for
101246418
sot-r.1
for
102586342
sot-r.1
for
102581773
sot-r.1
for
102594525
nta-r.1
for
107786351
nta-r.1
for
107812622
nta-r.1
for
107785175
osa-u.5
for
4335292
zma-u.5
for
100281639
hvu-r.1
for
123429271
sbi-r.1
for
8085843
bdi-r.1
for
100825269


Ortholog ID: 1829
Species cit ath ath bra bra bra ghi ghi ghi bna bna bna gma vvi vvi ppo ppo ppo mtr sly sly sot sot sot nta nta nta osa zma hvu sbi bdi
Symbol LOC102616539 RHA2B RHA2A LOC103872299 LOC103841054 LOC103839504 LOC107950384 LOC107951671 LOC107943500 LOC106415916 LOC106432023 LOC125587495 LOC102661897 LOC104879925 LOC100262985 LOC7482861 LOC7475555 LOC18099148 LOC25485456 LOC101266940 LOC101246418 LOC102586342 LOC102581773 LOC102594525 LOC107786351 LOC107812622 LOC107771321 LOC4335292 LOC100281639 LOC123429271 LOC8085843 LOC100825269
Function* E3 ubiquitin-protein ligase RHA2A RING-H2 finger protein 2B RING-H2 finger A2A E3 ubiquitin-protein ligase RHA2A putative RING-H2 finger protein ATL69 E3 ubiquitin-protein ligase RHA2B-like probable E3 ubiquitin-protein ligase XERICO E3 ubiquitin-protein ligase RHA2B E3 ubiquitin-protein ligase At4g11680 E3 ubiquitin-protein ligase RHA2A E3 ubiquitin-protein ligase RHA2B E3 ubiquitin-protein ligase RHA2A-like probable E3 ubiquitin-protein ligase XERICO probable E3 ubiquitin-protein ligase XERICO E3 ubiquitin-protein ligase RHA2A E3 ubiquitin-protein ligase RHA2A E3 ubiquitin-protein ligase RHA2A RING-H2 finger protein ATL72 E3 ubiquitin-protein ligase RHA2A E3 ubiquitin-protein ligase RHA2A probable E3 ubiquitin-protein ligase XERICO E3 ubiquitin-protein ligase RHA2A probable E3 ubiquitin-protein ligase RHA2B E3 ubiquitin-protein ligase RHA2A uncharacterized LOC107786351 E3 ubiquitin-protein ligase RHA2A-like uncharacterized LOC107771321 receptor homology region, transmembrane domain- and RING domain-containing protein 6 uncharacterized LOC100281639 RING-H2 finger protein ATL64-like E3 ubiquitin-protein ligase RHA2A E3 ubiquitin-protein ligase MPSR1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00906 Carotenoid biosynthesis 3
bra04016 MAPK signaling pathway - plant 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi04141 Protein processing in endoplasmic reticulum 4
ghi04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 3
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 4
sly00270 Cysteine and methionine metabolism 3
sly00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00510 N-Glycan biosynthesis 2
nta04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102616539 814644 838073 103872299 103841054 103839504 107950384 107951671 107943500 106415916 106432023 125587495 102661897 104879925 100262985 7482861 7475555 18099148 25485456 101266940 101246418 102586342 102581773 102594525 107786351 107812622 107771321 4335292 100281639 123429271 8085843 100825269
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