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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102619042   eukaryotic peptide chain release factor subunit 1-3 
 ath-u.5   ERF1-3   eukaryotic release factor 1-3 
 ath-u.5   ERF1-1   eukaryotic release factor 1-1 
 ath-u.5   ERF1-2   eukaryotic release factor 1-2 
 gma-u.5   100813343   eukaryotic peptide chain release factor subunit 1-3 
 gma-u.5   100786788   eukaryotic peptide chain release factor subunit 1-3 
 gma-u.5   100785916   eukaryotic peptide chain release factor subunit 1-3 
 vvi-u.5   100267567   eukaryotic peptide chain release factor subunit 1-3 
 vvi-u.5   100248954   eukaryotic peptide chain release factor subunit 1-3-like 
 vvi-u.5   100242471   eukaryotic peptide chain release factor subunit 1-3 
 ppo-u.5   7491448   eukaryotic peptide chain release factor subunit 1-3 
 ppo-u.5   7463221   eukaryotic peptide chain release factor subunit 1-3 
 ppo-u.5   7466289   eukaryotic peptide chain release factor subunit 1-3 
 mtr-u.5   25497360   eukaryotic peptide chain release factor subunit 1-3 
 mtr-u.5   11427620   eukaryotic peptide chain release factor subunit 1-3 
 mtr-u.5   11413561   eukaryotic peptide chain release factor subunit 1-3 
 sly-u.5   101261770   eukaryotic peptide chain release factor subunit 1-3 
 sly-u.5   101255309   eukaryotic peptide chain release factor subunit 1-3-like 
 sly-u.5   101251066   eukaryotic peptide chain release factor subunit 1-3 
 osa-u.5   4343757   eukaryotic peptide chain release factor subunit 1-3 
 osa-u.5   4338603   eukaryotic peptide chain release factor subunit 1-2 
 osa-u.5   4333840   eukaryotic peptide chain release factor subunit 1-3 
 zma-u.5   100281195   eukaryotic peptide chain release factor subunit 1-1 
 zma-u.5   100285172   eukaryotic peptide chain release factor subunit 1-1 

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Top 50 coexpressed genes to 102619042 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102619042 (cit-r.1 coexpression data)

CoexMap"102619042"


citLOC102619042 | Entrez gene ID : 102619042    
Species cit ath gma vvi ppo mtr sly osa zma bdi hvu bra bna sbi ghi sot nta cre tae
Paralog 1 3 3 3 3 3 3 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit03015 [list] [network] mRNA surveillance pathway (106 genes)
GO BP
GO:0002184 [list] [network] cytoplasmic translational termination  (2 genes)  IEA  
GO CC
GO:0018444 [list] [network] translation release factor complex  (3 genes)  IEA  
GO:0005829 [list] [network] cytosol  (791 genes)  IEA  
GO MF
GO:1990825 [list] [network] sequence-specific mRNA binding  (2 genes)  IEA  
GO:0016149 [list] [network] translation release factor activity, codon specific  (6 genes)  IEA  
Protein XP_052287993.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_052287993.1)
Subcellular
localization
TargetP
other 8  (predict for XP_052287993.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102619042
ath-u.5
for
ERF1-3
ath-u.5
for
ERF1-1
ath-u.5
for
ERF1-2
gma-u.5
for
100813343
gma-u.5
for
100786788
gma-u.5
for
100785916
vvi-u.5
for
100267567
vvi-u.5
for
100248954
vvi-u.5
for
100242471
ppo-u.5
for
7491448
ppo-u.5
for
7463221
ppo-u.5
for
7466289
mtr-u.5
for
25497360
mtr-u.5
for
11427620
mtr-u.5
for
11413561
sly-u.5
for
101261770
sly-u.5
for
101255309
sly-u.5
for
101251066
osa-u.5
for
4343757
osa-u.5
for
4338603
osa-u.5
for
4333840
zma-u.5
for
100281195
zma-u.5
for
100285172


Ortholog ID: 1347
Species cit cit ath ath bra bra ghi ghi bna bna gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC102617245 LOC102619042 ERF1-3 ERF1-1 LOC103874912 LOC103846307 LOC121203480 LOC107886140 LOC106382367 LOC106410576 LOC100813343 LOC100775731 LOC100242471 LOC100267567 LOC7466289 LOC7463221 LOC25497360 LOC11427620 LOC101246720 LOC101255309 LOC102596756 LOC102583208 LOC107798788 LOC4333840 LOC4326511 LOC100281195 LOC100285172 LOC123174147 LOC123095813 LOC123447345 LOC123412043 LOC8058380 LOC8055826 LOC100844328 LOC100824892 CHLRE_13g587050v5
Function* eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic release factor 1-3 eukaryotic release factor 1-1 eukaryotic peptide chain release factor subunit 1-1 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-2 eukaryotic peptide chain release factor subunit 1-1 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3-like eukaryotic peptide chain release factor subunit 1-3-like eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3-like eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-1 eukaryotic peptide chain release factor subunit 1-1 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3-like eukaryotic peptide chain release factor subunit 1-2-like eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-2 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra03013 Nucleocytoplasmic transport 2
bra03250 Viral life cycle - HIV-1 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 3
bra01240 Biosynthesis of cofactors 3
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 5
ghi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 5
bna03015 mRNA surveillance pathway 4
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 3
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 9
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 4
vvi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
mtr00020 Citrate cycle (TCA cycle) 2
mtr00630 Glyoxylate and dicarboxylate metabolism 2
mtr01200 Carbon metabolism 2
mtr01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 4
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 3
sly00190 Oxidative phosphorylation 3
sly03015 mRNA surveillance pathway 2
sly04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04146 Peroxisome 3
sly00230 Purine metabolism 2
sly00232 Caffeine metabolism 2
sly01232 Nucleotide metabolism 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
sot03020 RNA polymerase 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa00020 Citrate cycle (TCA cycle) 2
osa01200 Carbon metabolism 2
osa03060 Protein export 2
osa04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00020 Citrate cycle (TCA cycle) 2
zma01200 Carbon metabolism 2
zma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00510 N-Glycan biosynthesis 2
zma00513 Various types of N-glycan biosynthesis 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae04382 Cornified envelope formation 3
tae03050 Proteasome 2
tae04081 Hormone signaling 2
tae04082 Neuroactive ligand signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 4
sbi04016 MAPK signaling pathway - plant 3
sbi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
bdi01240 Biosynthesis of cofactors 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102617245 102619042 822273 834839 103874912 103846307 121203480 107886140 106382367 106410576 100813343 100775731 100242471 100267567 7466289 7463221 25497360 11427620 101246720 101255309 102596756 102583208 107798788 4333840 4326511 100281195 100285172 123174147 123095813 123447345 123412043 8058380 8055826 100844328 100824892 5719425
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