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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102620539   polypyrimidine tract-binding protein homolog 3 
 ath-u.5   PTB3   polypyrimidine tract-binding protein 3 
 ghi-r.1   107910463   polypyrimidine tract-binding protein homolog 3 
 ghi-r.1   121214606   polypyrimidine tract-binding protein homolog 3 
 bna-r.1   125591639   polypyrimidine tract-binding protein homolog 3-like 
 bna-r.1   106437680   polypyrimidine tract-binding protein homolog 3 
 gma-u.5   100819672   polypyrimidine tract-binding protein homolog 3-like 
 gma-u.5   100805732   polypyrimidine tract-binding protein homolog 3 
 gma-u.5   100798234   polypyrimidine tract-binding protein homolog 3 
 vvi-u.5   100249160   polypyrimidine tract-binding protein homolog 3 
 vvi-u.5   100243429   polypyrimidine tract-binding protein homolog 3 
 ppo-u.5   7492477   polypyrimidine tract-binding protein homolog 3 
 ppo-u.5   7467806   polypyrimidine tract-binding protein homolog 3 
 mtr-u.5   11440579   polypyrimidine tract-binding protein homolog 3 
 mtr-u.5   25496157   polypyrimidine tract-binding protein homolog 3 
 mtr-u.5   11417846   polypyrimidine tract-binding protein homolog 3 
 sly-u.5   101245436   polypyrimidine tract-binding protein homolog 3 
 sly-u.5   101243754   polypyrimidine tract-binding protein homolog 3-like 
 sot-r.1   PTB1   polypyrimidine tract-binding protein homolog 3-like 
 sot-r.1   102603741   polypyrimidine tract-binding protein homolog 3-like 
 nta-r.1   107772036   polypyrimidine tract-binding protein homolog 3-like 
 nta-r.1   107773170   polypyrimidine tract-binding protein homolog 3-like 
 nta-r.1   107799898   polypyrimidine tract-binding protein homolog 3 
 osa-u.5   4338905   polypyrimidine tract-binding protein homolog 3 
 osa-u.5   4325048   polypyrimidine tract-binding protein homolog 3 
 zma-u.5   100383701   uncharacterized LOC100383701 
 zma-u.5   100383343   Polypyrimidine tract-binding protein homolog 3 
 tae-r.2   123071547   polypyrimidine tract-binding protein homolog 3 
 tae-r.2   123079883   polypyrimidine tract-binding protein homolog 3 
 tae-r.2   123057278   polypyrimidine tract-binding protein homolog 3 
 hvu-r.1   123444795   polypyrimidine tract-binding protein homolog 3-like 
 hvu-r.1   123446620   polypyrimidine tract-binding protein homolog 3-like 
 sbi-r.1   8077166   polypyrimidine tract-binding protein homolog 3 
 bdi-r.1   100836949   polypyrimidine tract-binding protein homolog 3 
 bdi-r.1   100824168   polypyrimidine tract-binding protein homolog 3 

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Top 50 coexpressed genes to 102620539 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102620539 (cit-r.1 coexpression data)

CoexMap"102620539"


citLOC102620539 | Entrez gene ID : 102620539      
Species cit ath ghi bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi bra cre
Paralog 1 1 2 2 3 2 2 3 2 2 3 2 2 3 2 1 2 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043484 [list] [network] regulation of RNA splicing  (19 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (202 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2569 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (227 genes)  IEA  
Protein XP_006473079.2 [sequence] [blastp]
XP_006473080.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_006473079.2)
cyto 5,  chlo 1,  nucl 1,  mito 1,  plas 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for XP_006473080.2)
Subcellular
localization
TargetP
other 9  (predict for XP_006473079.2)
other 9  (predict for XP_006473080.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102620539
ath-u.5
for
PTB3
ghi-r.1
for
107910463
ghi-r.1
for
121214606
bna-r.1
for
125591639
bna-r.1
for
106437680
gma-u.5
for
100819672
gma-u.5
for
100805732
gma-u.5
for
100798234
vvi-u.5
for
100249160
vvi-u.5
for
100243429
ppo-u.5
for
7492477
ppo-u.5
for
7467806
mtr-u.5
for
11440579
mtr-u.5
for
25496157
mtr-u.5
for
11417846
sly-u.5
for
101245436
sly-u.5
for
101243754
sot-r.1
for
PTB1
sot-r.1
for
102603741
nta-r.1
for
107772036
nta-r.1
for
107773170
nta-r.1
for
107799898
osa-u.5
for
4338905
osa-u.5
for
4325048
zma-u.5
for
100383701
zma-u.5
for
100383343
tae-r.2
for
123071547
tae-r.2
for
123079883
tae-r.2
for
123057278
hvu-r.1
for
123444795
hvu-r.1
for
123446620
sbi-r.1
for
8077166
bdi-r.1
for
100836949
bdi-r.1
for
100824168


Ortholog ID: 5021
Species cit ath ghi ghi bna bna gma gma gma vvi vvi ppo ppo mtr mtr mtr sly sly sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi bdi bdi
Symbol LOC102620539 PTB3 LOC107910463 LOC121214606 LOC125591639 LOC106437680 LOC100805732 LOC100798234 LOC100791570 LOC100249160 LOC100243429 LOC7492477 LOC7467806 LOC11440579 LOC25496157 LOC11417846 LOC101245436 LOC101243754 PTB1 LOC102603741 LOC107772036 LOC107773170 LOC107799898 LOC4338905 LOC4325048 LOC100383701 LOC100383343 LOC123071547 LOC123134734 LOC123182144 LOC123444795 LOC123446620 LOC8077166 LOC100836949 LOC100824168
Function* polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 uncharacterized LOC100383701 Polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3-like polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3 polypyrimidine tract-binding protein homolog 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03013 Nucleocytoplasmic transport 3
cit03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 7
ghi03015 mRNA surveillance pathway 7
ghi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 7
ghi03015 mRNA surveillance pathway 7
ghi03040 Spliceosome 7
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna03040 Spliceosome 2
bna03050 Proteasome 2
bna00062 Fatty acid elongation 2
bna01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00062 Fatty acid elongation 2
bna01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 9
gma00640 Propanoate metabolism 4
gma00360 Phenylalanine metabolism 2
gma00071 Fatty acid degradation 2
gma00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 4
gma03050 Proteasome 3
gma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03250 Viral life cycle - HIV-1 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 6
mtr00020 Citrate cycle (TCA cycle) 5
mtr00785 Lipoic acid metabolism 4
mtr01210 2-Oxocarboxylic acid metabolism 4
mtr00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta00900 Terpenoid backbone biosynthesis 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta04120 Ubiquitin mediated proteolysis 3
nta03420 Nucleotide excision repair 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta03015 mRNA surveillance pathway 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00510 N-Glycan biosynthesis 3
osa00513 Various types of N-glycan biosynthesis 3
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 2
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 5
hvu00190 Oxidative phosphorylation 3
hvu04145 Phagosome 3
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 8
bdi03015 mRNA surveillance pathway 2
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 6
bdi03015 mRNA surveillance pathway 4
bdi03040 Spliceosome 3
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102620539 840918 107910463 121214606 125591639 106437680 100805732 100798234 100791570 100249160 100243429 7492477 7467806 11440579 25496157 11417846 101245436 101243754 102593799 102603741 107772036 107773170 107799898 4338905 4325048 100383701 100383343 123071547 123134734 123182144 123444795 123446620 8077166 100836949 100824168
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