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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT4G24015   RING/U-box superfamily protein 
 bra-r.6   108870377   probable E3 ubiquitin-protein ligase RHA4A 
 bra-r.6   103861627   probable E3 ubiquitin-protein ligase RHA4A 
 ghi-r.1   107928286   probable E3 ubiquitin-protein ligase RHA4A 
 ghi-r.1   107909133   probable E3 ubiquitin-protein ligase RHA4A 
 bna-r.1   111207831   probable E3 ubiquitin-protein ligase RHA4A 
 bna-r.1   106440558   probable E3 ubiquitin-protein ligase RHA4A 
 bna-r.1   106414116   probable E3 ubiquitin-protein ligase RHA4A 
 gma-u.5   100813129   probable E3 ubiquitin-protein ligase RHA4A 
 gma-u.5   100806499   probable E3 ubiquitin-protein ligase RHA4A 
 vvi-u.5   100266728   probable E3 ubiquitin-protein ligase RHA4A 
 ppo-u.5   7477840   probable E3 ubiquitin-protein ligase RHA4A 
 ppo-u.5   7497866   probable E3 ubiquitin-protein ligase RHA4A 
 mtr-u.5   25489610   probable E3 ubiquitin-protein ligase RHA4A 
 sly-u.5   101250143   probable E3 ubiquitin-protein ligase RHA4A 
 sot-r.1   102604263   RING-H2 zinc finger protein RHA4a-like 
 nta-r.1   107813388   putative E3 ubiquitin-protein ligase RHA4A 
 nta-r.1   107797778   putative E3 ubiquitin-protein ligase RHA4A 

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Top 50 coexpressed genes to AT4G24015 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G24015 (ath-u.5 coexpression data)

CoexMap"102625346"


citLOC102625346 | Entrez gene ID : 102625346      
Species ath bra ghi bna gma vvi ppo mtr sly sot nta hvu bdi osa tae zma cre sbi cit
Paralog 1 2 2 3 2 1 2 1 1 1 2 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (265 genes)  IEA  
GO CC
GO MF
GO:0016740 [list] [network] transferase activity  (3068 genes)  IEA  
Protein XP_006476349.2 [sequence] [blastp]
Subcellular
localization
wolf
extr 4,  nucl 2,  vacu 1,  cyto_nucl 1,  chlo 1,  cyto 1,  mito 1,  E.R. 1,  chlo_mito 1,  cyto_E.R. 1  (predict for XP_006476349.2)
Subcellular
localization
TargetP
other 9  (predict for XP_006476349.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AT4G24015
bra-r.6
for
108870377
bra-r.6
for
103861627
ghi-r.1
for
107928286
ghi-r.1
for
107909133
bna-r.1
for
111207831
bna-r.1
for
106440558
bna-r.1
for
106414116
gma-u.5
for
100813129
gma-u.5
for
100806499
vvi-u.5
for
100266728
ppo-u.5
for
7477840
ppo-u.5
for
7497866
mtr-u.5
for
25489610
sly-u.5
for
101250143
sot-r.1
for
102604263
nta-r.1
for
107813388
nta-r.1
for
107797778


Ortholog ID: 11536
Species ath bra bra ghi ghi bna bna bna gma gma vvi ppo ppo mtr sly sot nta nta
Symbol AT4G24015 LOC108870377 LOC103861627 LOC107928286 LOC107909133 LOC106440558 LOC106414116 LOC106376005 LOC100813129 LOC100806499 LOC100266728 LOC7477840 LOC7497866 LOC25489610 LOC101250143 LOC102604263 LOC107813388 LOC107797778
Function* RING/U-box superfamily protein probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A RING-H2 zinc finger protein RHA4a-like putative E3 ubiquitin-protein ligase RHA4A putative E3 ubiquitin-protein ligase RHA4A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
bra04075 Plant hormone signal transduction 2
bra00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 2
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01240 Biosynthesis of cofactors 2
gma01250 Biosynthesis of nucleotide sugars 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma03083 Polycomb repressive complex 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 2745724 108870377 103861627 107928286 107909133 106440558 106414116 106376005 100813129 100806499 100266728 7477840 7497866 25489610 101250143 102604263 107813388 107797778
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